Streptococcus intermedius B196: SIR_0439
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Entry
SIR_0439 CDS
T02830
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIR_0439 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sib03019
]
SIR_0439 (deaD)
03009 Ribosome biogenesis [BR:
sib03009
]
SIR_0439 (deaD)
Enzymes [BR:
sib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SIR_0439 (deaD)
Messenger RNA biogenesis [BR:
sib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SIR_0439 (deaD)
Ribosome biogenesis [BR:
sib03009
]
Prokaryotic type
rRNA helicases
SIR_0439 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGU75813
UniProt:
T1ZD13
LinkDB
All DBs
Position
417497..419041
Genome browser
AA seq
514 aa
AA seq
DB search
MKFNEFHLSPELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL
ERINTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIESLTKK
RMKGMKPASAEEAFQAKKKVALKKIERDFADEAIRSNFEKFGKDARKLAAKFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVSGANKGNRNHKGGNRRDRGNRRDNYKKGARNE
HFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaattccatttgtctcctgaattgttagcagaggttgaaaaagctggc
tttgttgaagccagcccaatccaagaacaaacaatcccgcttgctatggagggaaaagat
gtgattggacaagcgcagactggtacaggaaagacagctgcttttggttttccaactctt
gaaagaattaacacagaaaatccctttatccaagcgttagttattgcaccaactcgtgag
ttagctgttcaaagtcaggaagagctctttcgctttggccgtagtaaaggagtgaaagtt
cgatcagtttatggtggctctagcattgaaaagcaaattaaagccttgaaatcaggcgcc
cacattgtcgtaggaaccccagggcgtttattagacctcattaagcgcaaggcgttgaaa
ctcaatcatgtagaaattcttattttagatgaagcagacgaaatgctcaatatgggcttc
ttagaagacattgaagcaatcatctcacgcgtaccagaagaacgccaaaccttgctcttt
tctgcgacgatgccagatgctatcaagcggattggtgtgaagtttatgaaagatccaaca
catgtcaagattgcagcaaaagaattgacaacggagctggtggatcaatattacattcgc
gtaaaagaaaatgaaaaatttgataccatgacacgcctgatggatgtggagcagcctgag
ctgtctatcgtctttggtcggaccaagcgacgggtggatgagctgactcgtggacttaaa
ctccgtggtttccgagcagaggggatccatggtgatttggaccaaggcaagcgcctccgc
gtcctccgagactttaaaaacggcaatctggatgtcttggttgcgacagatgtagctgca
cgtggattagatatttctggtgttacccatgtttacaattacgatattccacaagacccc
gaaagttatgttcatcgtatcggacggacaggtcgtgctggaaaatctggtcagtctatt
acatttgtagcgccaaatgaaatgggttatcttcaaatcattgaaagcttaaccaaaaaa
cgtatgaaaggcatgaagccagcatctgcagaagaagcttttcaagctaagaaaaaagtt
gcactcaaaaagattgaacgagattttgcagatgaagctattcgtagcaattttgagaaa
tttggtaaggatgctcgtaagctagcggctaaatttacaccggaagaattagccttatat
attttgagtctgacagtacaggacccagatactcttccagaagtggaaattgcgcgcgaa
aaaccactaccgtttaaatatgtttctggtgccaataagggaaatcggaatcataaaggt
ggtaatcgtcgtgatcgtggtaatagacgcgacaattacaaaaaaggagctcgcaatgag
cattttgacaaggaaaaacgctaccgtaaagatcacaaaaaacctcgcaatacttcaagc
gaaaagaaaactggctttgtgattcggaataaaggggataaataa
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