Streptococcus intermedius B196: SIR_0539
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Entry
SIR_0539 CDS
T02830
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03420
Nucleotide excision repair
sib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SIR_0539 (pcrA)
03430 Mismatch repair
SIR_0539 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sib03400
]
SIR_0539 (pcrA)
Enzymes [BR:
sib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SIR_0539 (pcrA)
DNA repair and recombination proteins [BR:
sib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SIR_0539 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
SIR_0539 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_11
ResIII
Pox_VLTF3
Motif
Other DBs
NCBI-ProteinID:
AGU75911
UniProt:
T1ZDX9
LinkDB
All DBs
Position
540596..542878
Genome browser
AA seq
760 aa
AA seq
DB search
MNPLLTGMNDRQAEAVQTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITF
TNKAAREMKERAFSLNPATEDCLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM
KRILKNLNLDPKKWNERAILGTISNAKNDLIDEVAYENMAGDMYTEIVAKCYTAYQKELR
QSEAMDFDDLIMLTLRLFDQNPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKN
ICVVGDADQSIYGWRGADMQNILDFEKDYPEAKVVLLEENYRSTKTILQAANEVIRNNRN
RRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLTREGYSHKDFAVLYRTNAQSRT
VEEALLKANIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGT
VEKIRNFAASQNVSLLEASSQIMLSLVKGKAAQSVFDFANLILNLRERLDELTVTELVEI
VLEKTGYTEQLVAQGTLESQARIENIEEFLSVTKNFDEYSENDTEETGLDKLSRFLNDLA
LVADTDDAGTQESSEVTLMTLHAVKGLEFPVVFIIGMEENVFPLSRATEEEDELEEERRL
AYVGITRAEKVLFLTNANSRLLYGKTNYNRPTRFLNEISSDLLNYQGLARPANTSFKASY
VNGKTVQFGQGTSLAQALQERKRQVGPSSISSSQLPFGKNIEATQPDLNWAIGDIAHHKK
WGDGTVLEVSGSGSSLELKINFPEVGLKKLLASVAPIEKK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccttattaactggtatgaatgatcggcaggcggaggcagttcaaacgacagac
gggcctttgctgattatggcgggggctggttcgggtaagactcgggtactgacccatcgt
attgcttatttgattgatgaaaaattagttaatccctggaatattttggcgattaccttt
accaataaagcagctagggaaatgaaggagcgggcattttctttaaatccagcaactgag
gattgcttgattgcgacctttcactcgatgtgtgtgcgcatcctgcgacgggaagcagat
catattggttacaatcgcaattttaccattgttgatccgggagagcagcggaccttgatg
aaacggattctcaaaaatctcaatctcgatcctaagaagtggaatgagcgcgccattctg
ggcaccatttccaatgccaagaacgacctgattgatgaggtggcctatgagaatatggct
ggtgatatgtatacagaaattgtggctaagtgctatacagcttatcaaaaggaactgcgc
cagtcagaggctatggactttgatgatttgatcatgttgaccctgcggctttttgaccaa
aatcctgacgtcctgacctattaccagcaacgttaccagtacatccatgtagacgagtat
caagataccaaccatgcccagtaccagctggtcaagcttttggcttctcgttttaagaat
atctgtgtggttggagatgccgaccagtctatctatggctggcggggagccgacatgcaa
aatatcttggattttgaaaaagattatcctgaagctaaagtcgttcttctagaagaaaac
tatcgctctaccaagaccatccttcaggcagctaatgaggttattcgaaataaccgcaat
cgccgtcctaaaaatctttggactcagaatgaagatggagaagaaattgtctactatcga
gctaatgacgagcaggatgaagctctctttgtcgctcgaaccattgatcagctgacccga
gaaggctacagtcataaggattttgcagttctttaccggaccaatgctcaatcacggaca
gtggaagaagccctccttaaggccaatattccttataccatggtggggggcaccaaattc
tatagccgtaaggaaatacgggatgtcattagctatctaaatctcattgccaaccctagt
gataacatcagctatgagcgggtagtgaatgagcccaagcgtggtgttggtccgggaaca
gtagagaagattcggaattttgcagccagtcaaaacgtgtctcttttagaagcctcctca
cagattatgctttcacttgtcaaagggaaagctgctcagtcagtttttgactttgccaat
ctcattttgaatcttcgtgagcgactagatgagttgacggtgacagaattggtggaaata
gttctcgaaaagacgggttatactgagcaattagtagctcaagggacgctggaaagtcag
gctcgaattgaaaatattgaagaattcttatcggttaccaaaaattttgatgaatattct
gaaaatgatacagaagaaacggggcttgataagttaagccgtttccttaatgatctggct
ttggttgcggacacagatgacgctggcactcaggaaagctcagaagtgacacttatgacg
ctacatgctgtcaaggggttagaatttccagtggttttcattatcggtatggaagaaaat
gtcttcccacttagtcgggcaactgaagaggaagacgaattagaggaagagcgccgatta
gcctatgttggaattactcgtgctgaaaaagtcttgtttctgaccaatgctaactcgcgt
ttgctgtatgggaaaactaattataatcgaccaactcgttttctcaatgaaattagttcg
gatttattgaactaccaaggattagctcgaccggccaatacatcttttaaagcttcctat
gtaaatggaaaaaccgtccagtttggtcaagggacgagtctcgctcaagcattacaagaa
cgcaaacggcaagttggaccaagtagtatttcctcaagtcagttgccatttggcaagaat
atagaggctactcaaccagatttgaattgggctatcggtgatattgcgcaccataaaaaa
tggggagatggaactgtattggaggtgtcaggtagcggtagtagcctagaactaaaaatt
aattttccagaggttggattaaagaaattgttagcaagtgttgcaccaattgagaaaaaa
taa
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