Streptococcus intermedius B196: SIR_0718
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Entry
SIR_0718 CDS
T02830
Symbol
vacB
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIR_0718 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sib03019
]
SIR_0718 (vacB)
03016 Transfer RNA biogenesis [BR:
sib03016
]
SIR_0718 (vacB)
Enzymes [BR:
sib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SIR_0718 (vacB)
Messenger RNA biogenesis [BR:
sib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SIR_0718 (vacB)
Transfer RNA biogenesis [BR:
sib03016
]
Prokaryotic type
tRNA degradation factors
SIR_0718 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HVO_A0114
RNase_II_C_S1
HTH_24
CSD
Motif
Other DBs
NCBI-ProteinID:
AGU76086
UniProt:
T1ZEG4
LinkDB
All DBs
Position
724360..726699
Genome browser
AA seq
779 aa
AA seq
DB search
MKEEILSYLREKKEASMDELAQRLGKEKAKDFRNLVQMISEMERKRQLTFSNAGKIQIRK
EKQKLTLKGTFHAHKNGFGFVTLNEEEDDLFIGRNDVNYAIDGDRVEVIITKVADRSRGI
SAEAKIIDVLEHSLKTAVGQLILDEEKPKYAGYIRSKNQKISQPIYIKKPALVLDGTEIL
KVEIDKYPTKKHDFFVATILDVVGHKDDPGIDVLEVLESMDIVSEFPERVLKEASAIPDM
PSKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSE
LDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDQKGRVVKHTVT
QTVIKTTFRMTYSDVNDIITGDKEKRAAFKTIVPSIEQMTELHAILETMRFKRGALNFDT
KEAKILVNKTGRPVDIILRQRGVAERMIESFMLVANETVAEHFARLNLPFLYRIHEEPKA
EKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQARYSE
YNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDYGRSKEIAEHFEQVIPDIASQSSSRE
RRAIEAEREVEAMKKAEFMEEFVGEEFDGIVSSVVKFGLFVELSNTVEGLIHVANLPEFF
RYNERNLTLQGEKSGVVFRIGQRIRIKLVRSDKATGEIDFEYLPSEYDVIEKKKHSKFKQ
DRRQQSYRGDGERKSKPSKGIISRDKKSKKGKGKKPFYKEVTKKGSKNGKRRGKGRRSK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaaattttaagttatttaagagaaaaaaaagaagctagtatggatgagctg
gcacaaagattaggaaaagaaaaagcaaaagactttagaaatttagttcagatgatttct
gaaatggagcgaaaacgtcaattgacctttagcaatgctgggaaaattcagattcgtaaa
gaaaagcaaaagcttaccttgaaaggtacctttcatgcccataaaaatggctttggtttt
gtaaccttaaatgaagaagaggatgatctttttattggacgtaatgatgtcaactatgcg
attgatggtgatagggtagaagttataattactaaggttgcagatcgtagcaggggaata
tctgctgaagcgaaaattatcgatgttttggaacacagtttaaaaacagcagtgggtcag
cttattttggatgaagagaaacctaaatatgctggttatattcggtcaaaaaatcagaaa
atatctcaacctatttatattaagaaaccggctttggttttggatgggacagagatttta
aaagtagagattgataagtacccgactaaaaaacatgacttttttgtagctactattttg
gatgtagtgggtcacaaggatgatccgggtattgatgttctggaagttttggagtccatg
gatattgtgtctgagtttccagagagagttctgaaagaagcatcagcaattccggatatg
ccctctaaaaaggattttgaaggtcgtttagatctgcgtaatgaaattacctttactatt
gatggggcggatgctaaagatttggacgatgcagttcatatcaagaaactatcaaatgga
cattttgaactgggagttcatattgcagatgtttcttactatgttcaagaaggttctgaa
ttggataaggaagcgctcaatcgagcaacatctgtttatgtgacggatcgagtagtacct
atgctgcctgaacgcctatccaacggtatctgttcactcaatcctaatgtagatcggctg
acgcaatcggctatcatggagattgatcaaaaagggcgagttgttaagcatactgttact
caaacagtcattaagactacttttcgtatgacctacagcgatgtgaatgatataattaca
ggagacaaggaaaaacgagcagcatttaaaacaattgttccaagtatagagcaaatgaca
gagcttcatgctattttagaaacgatgcgtttcaagcgaggagcccttaattttgatacg
aaagaggctaaaatcttagttaataaaacggggcgcccagtagatattattttacgccag
cgcggagttgcggaacgtatgatcgagtcatttatgttggtcgcaaatgaaacagtggca
gagcattttgccagattaaacctcccctttctctatcggattcacgaagaacctaaggct
gagaaagtccagaagtttattgattatgcatctacctttggagttcgagtatatggaacg
gctaattctataagtcaatctgctcttcaagatattatgaaggcggtacatggtcagccc
tatgaagaagtgctatctatgatgcttttgcgctccatgcagcaggctcgttactcagaa
tacaaccacggccattatggtttggcagcagagttttacactcacttcactagtccaatt
cgccgctatccagaccttttagttcaccgtatggtgcgcgattacgggcgttctaaggaa
atagcagagcattttgagcaagtcattccagatattgccagtcagtcttccagcagggaa
cggcgagcgattgaagcggagcgagaagtagaagctatgaaaaaggctgagtttatggaa
gagtttgtgggagaagaatttgatggtattgtgtcgagtgtagtcaaattcggtctattc
gtcgaactttcaaatacagtcgaaggtttgattcatgtagccaacttgccagaatttttc
cgctacaatgaacgtaatctaactttgcagggtgaaaaatccggtgttgtttttcgaatc
ggccaacgaattcgcattaagttagttcgatcggataaggcgactggtgagattgacttt
gaatacctacctagtgaatatgatgtaattgaaaagaaaaaacactccaagttcaagcaa
gacagacgtcaacagtcttatcgtggtgacggagagcgaaagagcaaaccttcaaaagga
atcatttctagggataagaaatcaaagaaaggcaaagggaagaaaccattttataaagag
gtgactaagaaaggaagtaagaatggcaaaaggagagggaaaggtcgtcgctcaaaataa
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