Streptococcus intermedius B196: SIR_0807
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Entry
SIR_0807 CDS
T02830
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sib
Streptococcus intermedius B196
Pathway
sib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SIR_0807 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sib03021
]
SIR_0807 (rpoD)
Transcription machinery [BR:
sib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SIR_0807 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DprA_WH
DUF2316
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
AGU76175
UniProt:
T1ZE66
LinkDB
All DBs
Position
complement(820752..821864)
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AA seq
370 aa
AA seq
DB search
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGI
AITDKEGNPSERVLNTEEEEVELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQE
LAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTK
GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQ
LDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSR
SKPLRDFIED
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacaaaaagaagtaacaacttttgatgttcaagttgcagaatttattcgc
aaccataaaaaaactggtacagcaaccgatgatgaaatcaatgatcaactagtcattcca
tttactttaaatgctgatggtattgaggatcttcttcaacggattcaagatgcagggatt
gctattacagataaagaaggaaatccaagtgaacgagttttaaatacagaggaagaagaa
gttgaattaacagatgaggaattacttggcagtaattctgctaaagtgaatgatcctgtc
cgtatgtatttaaaagaaattggcgttgttccactattgaccaatgaagaagagcaagaa
ttagctgttcttgtggagcaaggcgatttggaagcgaaacagcgtttagcggaagctaat
ttgcgattggttgtttccattgcaaaacgctatgttgggcgcggtatgcagtttcttgac
ttgatccaagaaggaaacatgggattgatgaaagcagttgataaatttgactataccaaa
ggttttaaattttcaacctatgctacttggtggattcgtcaagcgattactcgtgcaatt
gccgatcaagctcgtacaattcgaattccggttcatatggtcgaaacaatcaataaatta
gtacgggaacaacgcaatcttttgcaggaattggggcaagatcccacaccggagcaaatt
gctgaacgtatggatatgacaccggataaagtccgcgaaatcttgaaaattgcacaggaa
ccagtatctcttgaaacgcctattggagaagaagatgacagtcatttaggcgattttatc
gaagacgaggtcattgaaaacccagttgattatacaacacgtatcgtcctgcgtgagcaa
ttagatgaggttcttgatacattaacagaccgtgaagaaaatgtgttgcgtttgcgtttc
ggtttagatgatggaaagatgcgtacactcgaagatgttggaaaagtttttaacgtaact
cgtgaacgaattcgacaaatcgaggcaaaagctctgcgtaaattacgtcatcctagtcgt
agcaaaccgttgcgtgattttattgaggattaa
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integrated database retrieval system
