Streptococcus intermedius B196: SIR_1301
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Entry
SIR_1301 CDS
T02830
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIR_1301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sib03019
]
SIR_1301
Messenger RNA biogenesis [BR:
sib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SIR_1301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
MetOD1
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGU76661
UniProt:
T1ZG18
LinkDB
All DBs
Position
complement(1362165..1363772)
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AA seq
535 aa
AA seq
DB search
MEMIFAGVFAVVIGLVIGYVSISARMKSAKEAAELTLLNAEQEATNLRGQAEREADLLLK
EVKRESKSLKKEALLEAKEEARKYREEVEAEFKSDRQELKQLESRLTERATSLDRKDDNL
TNKEKTLEQKEQSISDRTKNLEARENKLTELEQHKEAELERVAALSQTEARDILLTQTED
KLSKEIATRIREAEQEVKERSDKIAKDILVQAMQRIAGDYVAEQTNSTVHLPDDTMKGRI
IGREGRNIRTFESLTGIDVIIDDTPEVVTLSGFDPIRREIARMTMEALLKDGRIHPARIE
ELVEKNRLEIDHKIREYGEAAAYEIGAPNLHPDLMKIMGRLQFRTSYGQNVLRHSVEVAK
LSGVIASELGENAALARRAGFLHDIGKAIDREVEGSHVEIGTELARKYKEHPIVVNTIAS
HHGDVEAESVIAVIVAAADALSAARPGARSESLESYIKRLQDLEEIANSFEGVKNSFALQ
AGREIRIMVNPGQIKDDKITILAHDVREKIENNLEYPGNIKVTVIREMRAVDYAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgatttttgcaggtgtttttgccgtcgtcattggtttagtcattggatatgta
agtatctcagctcgcatgaaatcagcgaaagaagctgcggaacttactcttttaaatgct
gaacaagaagcaactaatttacgtggacaagctgagcgtgaagcggatttgttactaaaa
gaagtgaagcgcgaaagtaaatcccttaaaaaagaagcactgttagaggcaaaagaagaa
gccagaaaatatcgagaagaagttgaggcagaatttaaatctgatcgtcaagaattgaag
caactggaaagtcgtttgacagaacgtgcgacaagccttgatcgtaaagatgacaatttg
accaacaaagaaaaaacgctcgaacagaaagagcaaagtatttctgatagaactaaaaac
cttgaggcgcgtgaaaacaaactgacagagttggagcaacacaaagaagcagaattagaa
cgtgttgccgcactctcacaaacagaagcccgagatatccttctcactcagactgaagat
aaattatcgaaggaaattgcgacacggattcgtgaagcagagcaagaggtcaaagaacgt
tctgataaaatagcgaaggatattttggtccaagccatgcaacgaattgcaggtgactac
gttgccgagcaaactaattcaactgttcatctgccagatgatacgatgaaggggcggatt
attggacgggaaggtcggaatattcggacctttgaaagtttgacaggtattgatgtcatt
attgatgatacaccagaagtggtgaccctatctggattcgatccaattcggcgtgagatt
gctcgtatgacaatggaagcactattgaaagatggtcgcatccatccagctcgtattgaa
gaattggtagaaaagaatcgtctggaaattgatcataagattcgtgagtatggtgaagca
gcggcttatgaaatcggtgcaccaaatttgcatcccgatttaatgaagattatgggacgt
ttacagttccgtacatcctatggtcaaaatgtactgcgccattctgttgaagtcgcgaaa
ttatctggtgtcattgcaagtgaacttggtgaaaatgctgccttagcacgccgtgctggt
tttcttcatgatattggcaaagccattgaccgtgaagtggaaggtagccacgtggaaatt
ggaacagaattggctcgtaagtataaagaacatccaattgtggttaacacgattgctagt
caccatggtgatgtggaagcagaaagtgttattgctgttatcgtagctgcagcagatgct
ctcagcgccgctcgaccaggcgcacgcagtgaatctctggaaagctatatcaaacgtctc
caagatttggaagaaatcgccaatagctttgaaggcgtgaaaaacagttttgctttacaa
gcaggccgtgagattcggattatggtgaatccaggccaaatcaaagacgacaagattact
atcttagcacatgatgtgcgtgaaaagattgaaaacaatctcgaatatccaggaaatatc
aaagtaacggttattcgggaaatgcgtgctgtagattatgcaaaatag
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