Streptococcus intermedius B196: SIR_1677
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Entry
SIR_1677 CDS
T02830
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SIR_1677 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sib03021
]
SIR_1677 (rpoC)
03400 DNA repair and recombination proteins [BR:
sib03400
]
SIR_1677 (rpoC)
Enzymes [BR:
sib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SIR_1677 (rpoC)
Transcription machinery [BR:
sib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SIR_1677 (rpoC)
DNA repair and recombination proteins [BR:
sib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SIR_1677 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGU77024
UniProt:
T1ZFL9
LinkDB
All DBs
Position
complement(1772042..1775680)
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFQSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIICDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGQGSFVAKMGAEAIQDLL
KQVDLEKEIVDLKEELKTATGQKRVKAIRRLDVLDAFQKSGNKPEWMVLNILPVIPPDLR
PMLQLDGGRFASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAQNVKAAKRMVERGDERIWDVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMALRNGYVHLHTRVGI
ATDSLNKPWTENQKHKILLTTVGKILFNDIMPDELPYLQEPSASNMAEGVPAKYFLEPGQ
DVKEAISKLDLNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLVANQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRSITDGKEMIEPLE
ERLTGRYTKKSVKHPETGETIVGPDVLITEDMAREIVNAGVEEVTIRSVFTCNTRHGVCR
RCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVKGATGEGEYVVPFTARMKVAVGDQV
SRGAALTEGSIQPKHLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RIMDPGDTDLLMGTLMDITDFTDANRDVVISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNEVEIIEDTT
ATETVEETTPAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttcaaagtatgcaaatcaccctagcttcacctagtaaagtc
cgctcttggtcttatggggaagtgaagaaacctgaaacaattaactaccgtacactaaag
ccagaacgtgaaggactctttgatgaagtcatctttggccctacgaaagattgggaatgt
gcgtgtggaaagtataaacggattcgttataaaggaatcatttgtgaccgttgtggtgtt
gaagtcactcgtacaaaagtgcgtcgtgagcgtatgggacatattgagttaaaggctcct
gtttcccatatttggtattttaaaggaatcccgagccgaatgggcttgactttagatatg
agtcctcgtgcacttgaagaagtcatctattttgcagcttatgtggtaattgatccaaaa
gatacaccgcttgaacacaaatccattatgacagaacgtgaatatcgtgaacgtttacgt
gaatatggtcaagggtcatttgttgcaaaaatgggagctgaagcaattcaagatcttttg
aaacaagtagatttagagaaagaaattgttgacctcaaagaagagttaaaaacggcaact
gggcaaaaacgggtaaaagctattcgccgtttggatgttttagatgcctttcaaaaatct
ggtaacaagccagaatggatggtattaaatatcttaccagttattccaccagatttacgt
ccaatgcttcagttggacggtggacgtttcgcctcatctgacttgaacgacctttaccgt
cgtgttatcaaccggaataatcgtttggcacgtcttttggaattgaatgctccgggaatc
atcgtgcaaaatgaaaagcggatgctacaagaagcagttgatgctctgatcgacaatggt
cgtcgcggtcgtccaattactgggccaggtagccgtccgctcaaatcgttgagccacatg
cttaaagggaaacaaggacgtttccgtcaaaacttgctgggtaaacgggttgacttctcc
ggacgttcggttattgcggtaggtccaaccctcaagatgtaccaatgtggcgttccgcgt
gaaatggcgattgagcttttcaaaccgtttgtgatgcgggaaattgttgctcgtgattat
gcgcaaaatgtgaaagctgctaagcgcatggtagagcgcggcgatgagcgtatctgggat
gtcttagaagacgttatcaaagaacacccagtacttcttaaccgcgcaccgactcttcat
cgtttggggatccaagcatttgagccggtcttaatcgatggtaaagctcttcgtttgcac
ccattagtctgtgaagcctacaacgccgactttgacggagaccaaatggctattcacgta
ccattgtctgaagaagctcaggcagaagcacggattcttatgttagctgctgagcacatc
ctcaatccgaaagatggtaagccagttgttacaccttcacaagatatggtattagggaac
tactacctaacgatggaagaagccggtcgtgaaggcgaaggtatggtctttaaagatcgt
gatgaagctgtaatggctcttcgcaatggttatgttcacttgcatacgcgtgttgggatt
gcgacggatagtttaaacaaaccatggactgaaaatcaaaaacataaaattctcttgaca
acagttggtaagattcttttcaatgacatcatgccagatgaattgccatatttacaagag
ccatctgcttcaaatatggcagaaggtgtgcctgctaagtatttcttagaacctgggcaa
gatgttaaagaagcaatcagtaaacttgacttaaatgtaccgttcaagaagaaaaatctt
ggaaatatcattgcggaaatcttcaagcgtttccgtacaactgaaacatcggctttcctt
gaccgcctgaaagatcttggctatcatcattcaacgcttgctggtttgacagtagggatt
gctgatattccagttgttgaagataaggctgaaatcatcgaagagtcacataaacgtgtt
gaacaaatcacgaaacaattccgtcgtgggatgattacagacgatgagcgctataacgcg
gttactgcagaatggcgtgctgctcgtgaaaaattggaaaaacgcttggttgctaaccaa
gatccgaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctccaac
ttctcccagttggccggcatgcgtggtctgatggctgcgccaaatggacgtatcatggag
ttgccaatcttgtctaacttccgtgaaggtttgtctgttctggaaatgttcttctcaact
cacggagcgcgtaaagggatgactgatacagcccttaagacagctgactcaggttacttg
actcgtcgtctagttgacgttgcccaagacgttatcattcgtgaggatgactgtggtaca
gatcgcggtcttgtgattcgctctattactgatggtaaggaaatgatagagccactagaa
gaacgcttaactggtcgttatacgaaaaaatctgtcaaacatcctgaaacgggtgaaacc
atcgttggtccagatgtattgattactgaggatatggcacgtgagattgtaaacgctggt
gtcgaagaagtcactatccgttctgtctttacatgtaatacgcgtcatggtgtctgtcgc
cgttgttatggtattaacttggcaacgggtgatgcagttgaggtaggtgaagcagttgga
actattgctgcccaatcaatcggtgaaccaggaacacagttgaccatgagaaccttccac
acaggtggtgttgcttctaatactgatatcacgcaaggtctccctcgtgttcaagaaatt
tttgaggctcgcaatccgaaaggggaagcagtcatcacagaagtgaagggggaagttacc
gctattgaagaagatgcttctactcggacgaagaaggtctttgttaaaggtgcaactggt
gaaggcgaatatgtagtgccatttacagcccgtatgaaagtggctgtaggcgaccaagtt
tctcgcggtgcagcattaacagaaggttctatccaaccgaagcatttattggctgttcgt
gatgttttatctgttgaaacttacctgcttgctgaagtacaaaaagtttatcgcagccaa
ggggtagaaattggagacaaacacattgaggtaatggttcgtcaaatgattcgcaaggtg
cgcatcatggatcctggggatacagatcttcttatgggcactctaatggatatcacagac
tttacggatgctaaccgtgatgtggttatctcaggcggtgttcctgcaacggctcgtcca
gtccttatggggattaccaaagcttctctggaaactaacagcttcctgtctgcagcttcc
ttccaagaaacgactcgtgtcttgacggatgccgctatccgcggtaagaaagatcatctg
cttggcctgaaggaaaatgttattattggtaaaatcattccagctggtacaggtatggct
cgttaccgtaatctcgaaccgcaagctgtcaatgaagttgaaattatcgaagatacaacg
gcaacagaaactgtggaagagactactccagcagaataa
DBGET
integrated database retrieval system
