Saccharolobus islandicus LAL14/1: SiL_1265
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Entry
SiL_1265 CDS
T02620
Name
(GenBank) RNase PH
KO
K11600
exosome complex component RRP41
Organism
sic
Saccharolobus islandicus LAL14/1
Pathway
sic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SiL_1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sic03019
]
SiL_1265
Messenger RNA biogenesis [BR:
sic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SiL_1265
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SiL_1265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AGJ62714
UniProt:
M9U6U3
LinkDB
All DBs
Position
1199662..1200399
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AA seq
245 aa
AA seq
DB search
MLQVERPKLIFEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE
MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT
AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM
WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVEF
KEEGV
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagtggagagaccaaaactaatctttgaagatggaaagcgaatagatggtaga
aagccagatgaattaaggagtataaagatagaattgggagttctcaaaaacgctgatggt
tcagcgatttttgagatgggaaatacaaaggctatagcagcggtttacggtccaaaagaa
atgcatccaagacacttatctcttccggatagggcagtattaagagttagatatcatatg
acaccattctctacagacgagcgaaagaatcccgcacctagtagaagagagattgagctt
tctaaggttataagagaagctttagaatcagctgttttagtggaattgtttccaagaact
gccatagatgtttttactgaaatattacaagcagacgcgggatccagattagtttcattg
atggctgcgtctttggcgttagctgatgctggaattcctatgagagatttaatagctggg
gtagctgtagggaaggctgatggagtaatagttctagatttaaatgaacccgaggatatg
tggggagaggctgatatgccggttgcaatgatgccttctttaaaccaggtgacgttattt
cagttaaatggtaatatgactccggaggaatttaggcaagcttttgatttagcagttaag
ggtataaatataatatataatttagagagggaggctctaaaaagtaagtatgtagagttt
aaagaagagggtgtatag
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