Saccharolobus islandicus M.16.4: M164_1401
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Entry
M164_1401 CDS
T00906
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
sid
Saccharolobus islandicus M.16.4
Pathway
sid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M164_1401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sid03019
]
M164_1401
Messenger RNA biogenesis [BR:
sid03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
M164_1401
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
M164_1401
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
Motif
Other DBs
NCBI-ProteinID:
ACR42007
UniProt:
C4KHE3
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All DBs
Position
1314965..1315792
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AA seq
275 aa
AA seq
DB search
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGF
RVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccatcgaatcaaaatattatacctttaatcaagaaggaaagtatagta
agtctttttgagaaaggcactaggcaagacggaagaaaattaacggattatagacctctt
tctataaccctggattatgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttatgaagatacgcctaac
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgacgtttacgtattagactatggtgggaatgtattggatgcatgtacgttggcc
tcagttgcagcattgtataatactaaagtgtataaggtagaacaagattctaatgggttt
agagtcaataaaaatgaagttgtgggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaagttgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggacactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
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