Sideroxydans sp. CL21: SIDCL21_0461
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Entry
SIDCL21_0461 CDS
T09835
Name
(GenBank) source:FIG; ID:fig|6666666.470149.peg.461
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
side
Sideroxydans sp. CL21
Brite
KEGG Orthology (KO) [BR:
side00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
side03019
]
SIDCL21_0461
Enzymes [BR:
side01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SIDCL21_0461
Messenger RNA biogenesis [BR:
side03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SIDCL21_0461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
DUF559
OB_NTP_bind
Helicase_C
HA2_C
MTES_1575
DEAD
AAA_22
AAA_19
DUF2726
nSTAND3
T2SSE
HA2_N
FtsK_SpoIIIE
PhoH
AAA_25
NTPase_1
SLFN-g3_helicase
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
VVC82501
LinkDB
All DBs
Position
1:448101..452570
Genome browser
AA seq
1489 aa
AA seq
DB search
MNAVLSPLAQRRLARIQQLSAIEYPADLPVVARREELVQAIEKHQVIIVCGETGSGKTTQ
LPKICLSLGRGVLGVIGHTQPRRVAARSVGARIAHELKSELGGLVGYKVRFNDKVSPDTC
IKLMTDGILLAEIHHDPQLRQYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKLIITS
ATLDAERFAKHFAASSLTPTPLPEGEGLTPLRNSGSLALWERAGVRENYPIIPEILLTHA
RELRKNSTDAEQLLWALLRDRQLLDCKFRRQHPLGSYILDFYCHEVKLAIELDGGQHTED
AQNKHDEKRSAWLQEQGITVLRFWNNEVLTNTEGVLQSLFDWLNAVGSLIPPLSRGERES
ERLSELNPSPPGRGVGVRERSVSEAQSPSMQPAPIIQVTGRTYPVEIRYRPPQQNEEGDT
QDVPQAICSALDELSIGGLKGDVLVFLPGEREIRDTAEALRKHQHKGIEILPLFSRLSIA
EQDRVFKPASGVRRVVLATNVAETSLTVPNIGYVIDSGLARVNRYSVRQKVEQLRIENIS
RAAANQRAGRCGRVMSGVCIRLYEEADFLQRPEFTDAEIFRVSLATVILRMSALGLGEVE
EFPFIEPPGSRAIADGYQLLTELGAIAEGVPSPQPVNNPSPPGRGHGVREGGGSQFPSPS
GRGARGEGARQLTPLGHELAKLPLDPKVARLLLAGRQYQCLNEILIIASALALQDPRDRP
AERREAADAAHQRFNDERSDFLAYIKLWAWFQDAIKHKKTNKLWATECRDKFLSPLRLRE
WHELHQQLHAQVSEMGMRFNEQPATYEQIHKALLTGLLGNIGCKGVDKEPYYLGAREIKF
FIASNSVLAKKGTKWVVAAEIVETTKLFARCVARIEPEWLEEVGAHLIKRSYFDAHWEKK
AAQVAAWERSTLYGLIINPKKRVHYGPMNVAESREIFIREALVTGEFNTQAPFFTHNQKL
IADIEALEHKARRPDVLVDDELIFAFYDERIPAGIHNGAAFEHWRKEAEREQPKLLYLKK
DDLMRHEAAGITTEQFPPQMMMNNVSYALAYNFAPGKNDDGVTLTVPQALLNQVSAARCE
YLVPGVLPEKIAQLVKSLPQKIRRNCVPVPEFAAAFSAAVKPSDTPLLQALSRYIREQKQ
LDVPLDAFRLEQLPAHLLMNFRVVDEHGRQLGMSRNFAQLRGEWAPKQTVAAPVAVAKNA
APQLKSAGEHYTEWKFEDFKATREESRAGQTITVFNALVDAGDAVTLQSFDTRDTAQAAQ
RLGLRRLFMLALKEQVKYLEKNLPGLQAMAMQFLPFGSQQDLQRQVLAVTFDRCCLNEPW
PETEKDFAARCKDAKARLNLVAQEIARLVAAVLAEHHALQKMLPGFKAHAQVLQDIRQQC
DWLLGKEWVARTPYERMQHMPRYLKAINVRLEKLRTNPARDAQNMAQMYPLLQQWQRRLS
AQHGEVDARLEDFGWMMQELRVSLYAQELKTPVIVSVKRLEKMLAGLSS
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgtcttgtcaccccttgcccagcgccgcctggcgcgtatacagcaactctcc
gccatcgaataccccgccgacctgcctgtcgtggcgcggcgcgaggagttggtgcaggcg
atcgaaaagcatcaggtcatcatcgtgtgcggcgagacgggttcgggcaagaccacgcaa
ctacccaagatttgcttgagtctcggacgcggtgtgctgggtgtcatcgggcatacccag
ccgcgcagggtggcggcacgttcggtgggtgcgcgtattgcgcatgagttgaagtctgaa
ctcggtggactggtcggctacaaggtgcgcttcaacgacaaggtgtcgcccgatacctgc
atcaaactgatgaccgacggcatcctgctggcggagatacaccacgacccgcagctcagg
caatacgacaccatcatcatcgacgaggcgcatgaacgctcgctgaacatcgattttctg
ctgggctatctgcggcaactgctcccgcgccgccccgatctcaagctgatcatcacctcg
gcgacgctggatgcggagagatttgcgaagcattttgctgcgagttccctcaccccaacc
cctctcccagagggcgaggggctaaccccgctccgcaactctggctccctcgccctctgg
gagagggctggggtgagggagaattacccaataatcccggaaatcctgcttacccacgca
cgcgaattacgcaagaactcaacagacgcagagcagttgctttgggcgctactgagagac
aggcaactgctagattgcaagtttcgccgccagcacccgctgggttcatacatcctcgat
ttctattgtcatgaagtgaaactcgccattgagctggatggtggacaacacacagaggat
gcgcaaaacaagcatgatgaaaaacgcagtgcatggttgcaggagcaggggatcaccgtg
ctgcggttttggaacaacgaggtgctgacgaatacggagggggtgctgcaatcgctgttt
gattggttgaatgcggtgggttccctcatcccacccctctcccggggggagagggagtct
gagcggctctctgaattaaacccctctccccccgggagaggggttggggtgagggagcgc
tcagtcagcgaagctcaatctccaagcatgcagccggctcccatcatccaagttaccggt
cgtacctaccctgtcgagatacgctaccgcccgccgcaacaaaacgaagaaggcgatacg
caggatgttccgcaggcgatatgcagtgcgctggatgaattaagtatcggcggcttaaaa
ggcgatgtgctggtattcctgcccggcgaacgcgagatacgcgataccgcagaggccctg
cgcaagcatcagcacaagggtatcgaaatcctgccgctgttctcgcgcctgtccatcgcc
gagcaggatcgcgtgttcaaacccgcttccggtgtgcgccgcgtggtgctggcgaccaat
gttgcggagacgtcgcttaccgtgcccaacatcggctacgtgatcgacagtggtctggcg
cgcgtcaaccgctacagcgtgcgacagaaggtggagcagttgcgcatcgagaatatctcg
cgcgccgccgccaaccagcgcgccggtcgttgtggccgggtgatgagcggcgtgtgcatc
cgtttgtatgaagaagcggattttctgcaacgccccgagtttaccgatgccgagatattt
cgtgtatcgctggctaccgtgattttgcgcatgagcgcattggggctgggagaggtggaa
gaattcccgttcatcgagccgccgggttcgcgcgccattgcggatggttatcaattgctc
actgagttgggggcgatagcggagggcgtgccctcaccccaacccgtgaataacccctct
ccccctgggagagggcatggggtgagggaagggggagggagccagttcccctcgccctcg
ggaagaggggctaggggtgagggtgctcgccagctcacaccgctcggccacgaactggcc
aagctgccgcttgaccccaaggtagcgcggctgttgctcgcggggcggcaataccaatgt
ctcaacgagatcctcatcatcgccagcgcgctggccctgcaagacccgcgcgaccgcccg
gcggaacggcgcgaggcagccgatgcggcgcatcagcgcttcaacgacgagcgctcggat
ttcctcgcctacatcaagttgtgggcgtggttccaggacgcgatcaaacacaagaagacc
aacaagttgtgggcgaccgagtgccgcgacaaatttctgtcgccgctgcgcctgcgcgaa
tggcacgagctgcaccagcagttgcatgcacaggtgtcggagatgggcatgcgcttcaac
gagcaacccgccacctacgaacagatacacaaggcgctgttgaccggcctgctcggtaac
atcggctgcaagggggtggacaaggagccgtattacctcggcgcgcgcgagatcaagttc
ttcatcgcgtcgaactcggtgctggcgaagaagggcaccaagtgggtggtggcggcggag
atcgtggagacgaccaagctgttcgcgcgctgcgtggcgcgcatcgaaccggaatggctg
gaagaagtcggcgcgcacctgatcaaacgcagctacttcgatgcgcactgggagaagaag
gcggcccaggtggcggcatgggaacgcagtaccttgtacggtctgatcatcaatccgaag
aaacgcgtgcattacgggccgatgaacgtggcggagtcacgcgaaattttcatacgcgag
gcactggtgacaggcgagtttaacacgcaggcgccgttctttacccacaaccagaaactg
atcgccgatatcgaagcgctggaacacaaggcacgccgccccgatgtgctggtggacgac
gaactgatcttcgcgttctacgatgagcgtatcccggcaggaatacacaacggcgcggca
ttcgagcattggcgcaaggaggccgagcgcgagcaaccgaaactgttgtacctgaagaag
gacgacctgatgcggcacgaggcggccggcatcaccaccgaacagttcccgccgcagatg
atgatgaacaacgtgagctatgccttggcttacaacttcgcgccgggcaagaacgacgac
ggcgtcacgctgaccgtgccgcaggccttgctcaatcaagtgtcagcggcgcgctgtgaa
tatctggtgccgggagttttgccggaaaagattgcgcagttggtgaagtcgctgccgcag
aagattcgccgcaattgcgtgccggtaccggaattcgcggcggcgttcagtgcggctgta
aagccttcggatacgccgctgttgcaggcgctgtcacgttacatccgcgagcagaaacaa
ttggatgtgccgctggatgcgttccggttggaacaattgcctgcgcaccttctgatgaat
ttccgggtggtggacgagcacgggcgacaactcggcatgtcgcgcaactttgcgcagttg
cgcggggagtgggcgccgaagcaaaccgtcgcggcaccggtggccgttgcgaagaatgcg
gctccgcagctgaagagcgccggggagcattacaccgaatggaaattcgaggatttcaag
gctacgcgcgaggaaagccgtgcaggacagaccatcaccgtgttcaacgcgctggtggac
gcgggcgacgcggtgaccttgcagagtttcgacacgcgcgatacagcacaagccgcgcag
cgtctgggcttgcggcgcttgttcatgctggcgctgaaagagcaggtgaagtacctggag
aagaacctgccgggtctgcaagcgatggccatgcagtttttgcctttcggctcacaacag
gatttgcagcggcaggtgctcgctgtaactttcgatcgctgctgcctgaacgagccgtgg
ccggaaactgagaaggatttcgccgcgcgctgcaaagatgcgaaagcgcggctgaatctg
gtggcacaggaaatcgcgcgtctggttgcggcagtgctggcagagcatcatgccctgcaa
aaaatgctgcccggattcaaggcgcacgctcaggtgttgcaggacatacgccagcagtgt
gactggttgctgggcaaggagtgggtcgcgcgcacgccgtatgaacgcatgcagcatatg
ccgcgctatctgaaagcgatcaacgtgcgtctggaaaaactgcgtacgaacccggcacgc
gatgcgcagaacatggcgcagatgtatcctttgctgcagcaatggcagcgaagattatct
gcacagcatggcgaggttgatgcgcggctggaagatttcggctggatgatgcaggagttg
cgcgtctcgctctatgcgcaggagctgaaaacaccggtgatcgtgtcggtaaagcgtctg
gaaaagatgctggcaggcttaagcagttaa
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