Sideroxydans sp. CL21: SIDCL21_2188
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Entry
SIDCL21_2188 CDS
T09835
Name
(GenBank) source:FIG; ID:fig|6666666.470149.peg.2188
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
side
Sideroxydans sp. CL21
Pathway
side03030
DNA replication
side03430
Mismatch repair
side03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
side00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SIDCL21_2188
03430 Mismatch repair
SIDCL21_2188
03440 Homologous recombination
SIDCL21_2188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
side03032
]
SIDCL21_2188
03400 DNA repair and recombination proteins [BR:
side03400
]
SIDCL21_2188
Enzymes [BR:
side01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SIDCL21_2188
DNA replication proteins [BR:
side03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SIDCL21_2188
DNA repair and recombination proteins [BR:
side03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SIDCL21_2188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
AAA_22
RuvB_N
AAA_16
AAA_14
AAA_5
AAA_30
ResIII
PIF1
AAA_7
AAA_18
AAA_assoc_2
TniB
AAA_19
TsaE
Rad17
nSTAND3
RCF1-5-like_lid
Mg_chelatase
AAA_24
DUF3646
ABC_tran
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
VVC84228
LinkDB
All DBs
Position
1:complement(2236431..2238032)
Genome browser
AA seq
533 aa
AA seq
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MSATSVLARKWRPKNFAQLAGQEHVVQALTNALTQNRLHHAYLFTGTRGVGKTTIARIFA
KSLNCESGITATPCGVCGACTEIDSGRFVDLIELDAASNTQVDNMRELLESALYAPTSGR
FKVYIIDEVHMLSKSAFNAMLKTLEEPPSHVKFILATTDPQKIPVTVLSRCLQFNLKQLP
PALILTHLQYVLGQENIPFENGALNLVARAAQGSMRDALSLLDQAIAYSSGKVDEGLVRT
MLGAIDQGYLFDLLQTLRAGDGPGLLRIADDMAIRSLAFEAALQDLATLLHRIALAQTIP
QAIPDDEPERVRLLELAQQFTPEEIQLDYQIVIHGRNEINLAPDEYAGFTMTLLRMLAFA
PQNAGANAVQSAPRAAPVAPSVSKLIAAEPAPARQTVHAEQSPASDSGLDWNTLLSQLNL
QGMARELAKNSVLASFTEGRVVLNLAPQHKHLQSNKIAQDKLQAALSEYFAKPIRLTVEL
GEAKDAATPAAVEQQEKQTRQQQAEEAIKHDAFVREAQVHLGAQVIENSIRPV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaacttcagtcttagcacgcaaatggcgtcccaagaacttcgctcaactggcg
gggcaggaacatgtcgtccaggcgttgaccaacgcgctcacgcagaatcgcctgcaccat
gcttatcttttcaccggcacgcgcggtgtgggcaagaccaccatcgcgcgtatcttcgcc
aaatccctgaattgcgaatccggcatcacggccacaccgtgtggcgtgtgcggcgcctgt
accgagatcgacagcggacgcttcgtcgacctgatcgagctggatgcggcgtcgaacacc
caggtcgacaacatgcgcgagttgctggaaagcgcgctgtatgcgccgaccagcgggcgt
ttcaaggtatatatcatcgacgaagtgcacatgctgtcgaagtcggcgttcaacgcgatg
ctgaagacgctggaagagccgccgtcgcatgtgaaattcattcttgccaccaccgatccg
cagaagattccggttaccgtgttgtcgcgctgtctgcagttcaacctcaagcagttgccg
cccgcgctgatactgacccatctgcaatatgtgctgggacaggaaaatatcccgttcgag
aacggggcgctgaacctggtggcacgcgccgcgcagggcagtatgcgcgacgccttgagc
ctgctggaccaagccattgcctattcgtccggcaaggtggacgagggattggtgcgcacc
atgctgggcgcaatcgaccagggttacctgtttgacctgttgcaaacgctgcgtgccgga
gacggtcctggtctgttgcgcatcgccgatgacatggccatacgcagcctggcattcgag
gcagcattgcaggatctggcaacactgttgcatcgcattgcgctggcccagaccattccg
caggcgattccggatgacgagccggagcgtgtacgtttgttggaactggcgcagcagttc
acgccggaagaaatacaacttgactaccagatcgttattcacgggcgcaacgaaatcaac
ctcgcaccggacgaatatgcgggattcaccatgacgctgttgcgcatgcttgcattcgcg
ccgcaaaatgccggagcgaacgcagtgcagtcggcgccgagagctgcaccggtggcgccg
agtgtatcgaagctgattgccgccgaacctgcgccggcacgccagactgttcatgcggag
caaagcccggcgagtgattccgggctggattggaatacattgctgtcgcaactcaacctg
caaggcatggcgcgcgaattggcgaaaaacagcgtgttggcaagctttacagaggggcgt
gtagttttgaatctggccccgcaacataaacacctgcaaagcaacaagatcgcccaggac
aaattgcaagctgcactgagtgagtatttcgccaaaccgatcaggctgactgtggagctg
ggggaggcgaaagatgctgcaacccctgccgctgtcgaacagcaggagaagcagacgcgt
cagcaacaggctgaagaagccatcaagcatgatgctttcgtgcgcgaagctcaggtgcac
ctgggtgcgcaagtgatcgaaaactcgatcagaccagtataa
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