Streptococcus intermedius JTH08: SCIM_0149
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Entry
SCIM_0149 CDS
T02156
Symbol
cbf1
Name
(GenBank) cmp-binding factor 1
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
sie
Streptococcus intermedius JTH08
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sie03019
]
SCIM_0149 (cbf1)
Messenger RNA biogenesis [BR:
sie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCIM_0149 (cbf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
BAM22803
LinkDB
All DBs
Position
180659..181603
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AA seq
314 aa
AA seq
DB search
MKINQMKKDELFEGFYLIKSAELRQTRAGKNYLAFTFQDDTGTIEGKLWDAQPHNVEEFT
AGKVVHMQGRREVYNNTPQVNQITLRLPKVDEPNNPADFKEKPPVDVQELREYLSQMIFK
IENPVWQRVVRALYAKYDKEFYSYPAAKTNHHAFEAGLAFHTATMVRLADAIGEIYPQLN
KSLLYAGIMLHDLAKVLELTGPEQTEYTIRGNLIGHIALIDEEITKVLAELKIDDTKEDV
IILRHVLLSHHGLLEYGSPVRPKIMEAEIIHMIDNFDAEMMMMTSALALVGEGEMTNRIF
AMDNRSFYKPNFDK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaccaaatgaaaaaagatgagctatttgaaggattttatctcatcaaatct
gctgaacttcgtcaaacaagggcagggaaaaactatttggcattcacctttcaagatgac
actggaacgattgaagggaaattgtgggatgcacaaccacacaatgtggaagaatttact
gctggaaaagttgttcatatgcaagggcgtagagaagtatataacaacacgcctcaagta
aatcaaattactttacggttgcctaaagttgacgaaccaaataatccagctgacttcaag
gaaaaaccaccagttgatgtacaagaactacgtgagtatctttcacaaatgattttcaaa
attgaaaatccagtttggcagcgtgtggtgcgagccttgtatgctaaatatgataaagaa
ttttattcgtatccagcagcaaaaacgaatcaccacgcctttgaagcagggctggctttt
catacagctaccatggtacggttagcagatgctattggtgagatttatcctcagttaaat
aagagcttgttgtatgcaggaattatgctacatgatttagcaaaagtattagaattgaca
ggccctgaacagacagagtatacgattcgagggaatctcatcggtcacattgccttaatt
gatgaagaaattacaaaagtgttggcagaattaaaaattgatgatacgaaagaagatgtc
attattctccgtcacgttttgctcagtcatcacggtttattggaatacggtagtccggtg
cgtccaaaaatcatggaagctgaaattatccacatgattgataattttgatgccgaaatg
atgatgatgacctcggctttagccttagttggtgaaggtgaaatgaccaatcgaatcttt
gcaatggataatcgttccttctataaacctaattttgataagtaa
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