Streptococcus intermedius JTH08: SCIM_0263
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Entry
SCIM_0263 CDS
T02156
Symbol
uvrA
Name
(GenBank) excinuclease ATPase subunitA
KO
K03701
excinuclease ABC subunit A
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCIM_0263 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_0263 (uvrA)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIM_0263 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCIM_0263 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
nSTAND1
AAA_29
RsgA_GTPase
AAA_22
nSTAND3
AAA_21
AAA_25
AAA_33
nSTAND6
AAA_18
ATPase
NACHT
Viral_helicase1
AAA_14
AAA_23
MMR_HSR1
BCA_ABC_TP_C
NB-ARC
cobW
DUF87
DnaJ_CXXCXGXG
NTPase_1
Septin
MeaB
PRK
T2SSE
DUF463
IIGP
SF3a60_Prp9_C
Dynamin_N
Zf_IFT144_1st
Motif
Other DBs
NCBI-ProteinID:
BAM22917
LinkDB
All DBs
Position
303709..306543
Genome browser
AA seq
944 aa
AA seq
DB search
MVRMQDKIIIHGARAHNLKNVDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVES
LSAYARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTATEINDYLRLLYARVG
TPYCINGHGAIKASSVEQIVNQVLELPERQRLQILAPVIRKKKGQHKTIFDKIQKDGYVR
VRVDGDIYDVTEVPELSKTKKHDIEVVVDRIVIKKSVRGRLFDSIEAALRLAEGYVVIDT
MDGKELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGIKLEVDLDLVVPDSS
KSLREGALAPWNPISSSYYPQMLAQAMEAFGIEMDKPFEELSEEEKQLIFFGSDGREFHF
HYENEFGGVRDIDIPFEGVVTNINRRYHETNSDFTRSQMRLYMNELTCASCHGYRLNPQA
LSVKVGGEGGVNIGQVSDLSIADHLELLSHLTLTENEVAIATPIIKEIRDRLTFLHNVGL
NYLTLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLIASLKKMR
DLGNTLIVVEHDEDTMREADWLIDVGPGAGVFGGEIVAAGTPEQVAKSKKSITGQYLSGK
REIPVPLERRVGNGRFIEVTGAREHNLQNITARFPLGKFIAVTGVSGSGKSTLVNSILKK
AIAQKLNRNSDKPGKFKNISGIEHIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAK
TNEAKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLE
VHYKEKNIAQVLDMTVNDAVEFFKHIPKIERKLQTIKDVGLGYVTLGQPATTLSGGEAQR
MKLASELHKRSTGKSFYILDEPTTGLHTEDIAKLLQVLSRFVDDGNTVLVIEHNLDVIKT
ADHIIDLGPEGGIGGGTIIATGTPEEVAANSASYTGQYLKGKLK
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
gtggtaagaatgcaggataaaattatcattcatggagcgcgagcccataatttaaaaaat
gttgatgttacgattccgcgggataagttggttgtagtgacagggctgtctggttcaggc
aagtctagcttagcttttgatactctctatgcagagggacaacggcgttatgtagaaagc
ctgtcggcttatgcccgtcaatttttgggcaacatggaaaaaccagatgtggattcaatt
gacggtcttagccctgctatttccattgaccaaaaaacgactagcaagaatcctcgttca
acagtcggaacagctacagaaatcaatgattacctccgtttgctctatgcgcgtgtggga
actccatattgtatcaatgggcatggagccattaaagcttcttctgtagaacaaatcgtc
aatcaagttttggaattacccgaacgtcagagattacaaattctagcgccagttatccgt
aagaaaaaaggacagcacaagacaatctttgataaaattcaaaaagatggatatgttcgg
gtgcgcgtggatggagatatttatgatgtaaccgaagtcccagagctttctaaaacgaaa
aagcacgatatcgaagtagtggtggatcggattgtcattaagaagagtgtacgcggtcga
ttatttgattcgattgaagcagctttaaggcttgcggaaggttacgtggtgattgatacg
atggatggcaaagaattactcttttccgagcattatgcctgtccagtctgtggttttacg
gttcctgaactcgaaccgcgccttttctcttttaatgccccatttggctcctgctctgac
tgtgacggcttaggtatcaagttagaggttgatttggatcttgtagtgcctgatagtagt
aaatcattacgtgaaggagctctagcaccgtggaatccaatttcttctagttattatccg
caaatgttagctcaggcgatggaagcctttggcatcgagatggataagccttttgaggaa
ttgagtgaggaagaaaaacagctgattttctttggctcagatggtcgagagttccatttt
cactatgaaaatgaatttggtggcgtgcgggatatcgacatcccttttgaaggagtagta
accaatatcaaccgccgctatcatgaaactaacagtgattttacccgtagccaaatgcgt
ctttatatgaatgagttgacttgtgcaagttgccatggttatcgattgaatccacaagcc
ttgtctgttaaagtggggggtgaaggtggtgttaatattgggcaagtatctgatttgtct
attgcagatcatttagaattactttctcatctgactttgactgaaaatgaagtggccatt
gcaacaccgattattaaagaaattcgcgatcgcttgacttttcttcataatgtcgggctt
aattacttgacactatctcgttctgctggaacattgtcgggtggtgagagtcagcggatt
cgcttggcaactcaaattggctccaatctcagtggtgttctttatatcttggatgaaccc
tctattggtctacaccagcgggataacaatcgcttgattgccagtctcaaaaaaatgcgt
gatttgggcaatactctcattgtggttgaacatgatgaagatactatgcgcgaagcggat
tggttgattgatgttggacctggagcaggtgtttttggtggtgaaattgttgcggcaggc
actccagagcaagttgcaaaaagcaagaaatcaattacaggtcagtatttatcgggcaaa
cgtgaaattccagtgccattggagcgccgcgtaggaaacggccgctttattgaagtaaca
ggtgcgcgagagcacaatttgcaaaacatcacggcccgcttcccgttaggaaaatttata
gccgtgacgggagtttccggttctgggaaatccaccttggttaattccattttgaaaaaa
gcaatcgctcaaaaactcaatcgtaattcagacaaaccgggtaaattcaaaaatatttca
ggaattgagcatattgatcgtttgattgatattgaccagagcccgatcggccgaacacca
agatccaatccagcgacgtatactggcgtctttgatgatattcgcgatctctttgctaag
accaacgaagctaagattcgtgggtataaaaaggggcgtttctctttcaatgtgaagggg
ggacgctgcgaggcctgctctggggatgggattatcaagattgagatgcactttttacca
gatgtttatgtcccttgtgaggtttgccatggaacacggtacaatagtgaaaccttggaa
gtgcactacaaagagaaaaacattgctcaagttttggatatgacggtcaatgatgcagtg
gaattttttaagcatattcctaaaattgagcggaaacttcagaccatcaaagacgtagga
ctaggatatgtaacattaggacaacctgccacaactctttctggtggtgaggctcagcgg
atgaaactagccagcgaacttcacaagcgctcaacaggtaagtctttctatattctggat
gaaccaactacaggtctgcacacggaggatattgcgaaacttctccaagtgctatcacgt
tttgtagacgatggcaatacggttctcgtcatcgaacataatttggacgttattaagacg
gccgatcacattattgatcttggaccagaaggtggtattggtggaggtactattattgct
actggtacaccagaagaagtagctgcaaactctgctagctatactggccagtatctaaaa
ggaaagttaaaataa
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integrated database retrieval system
