Streptococcus intermedius JTH08: SCIM_0344
Help
Entry
SCIM_0344 CDS
T02156
Symbol
nifS
Name
(GenBank) class-V aminotransferase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie00450
Selenocompound metabolism
sie01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
SCIM_0344 (nifS)
Enzymes [BR:
sie01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
SCIM_0344 (nifS)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
SCIM_0344 (nifS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Cys_Met_Meta_PP
Beta_elim_lyase
DegT_DnrJ_EryC1
SelA
DUF6311
Motif
Other DBs
NCBI-ProteinID:
BAM22998
LinkDB
All DBs
Position
396625..397857
Genome browser
AA seq
410 aa
AA seq
DB search
MSKLDVEAVRKDFPILNQIVNDEPLVYLDNAATTQKPRQVLEAVLAYYEKDNANVHRGVH
TLAERATTAYEAARERIRSFIHAASTKEVLFTRGATTGLNWVANYAKSVLQPGDEVLISV
MEHHSNIIPWQEACKKTGARLIYAYLKNGMLDLADLQSKLTKKTRFVALAHVSNVLGVMN
PIKEIAGMVHQVGALLVVDGAQSIPHVKIDVQDLDVDFFAFSGHKMLGPTGIGVLYGKEE
FLKKMSPIEFGGEMIDFVYEQDATWKELPWKFEAGTPNIAGAIGLAAAIDYLDNIGMATV
HQYEQDLIAYLFPKLQAVKGLTIYGSENVDQRSGVISFNLTGLHPHDVATALDYEGVAVR
AGHHCAQPLLSYLGVPATVRASFYIYNTKADCDKLVEALKKTKEFFNGTF
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacttgatgtagaagctgttcggaaggactttccaattttgaatcaaattgtc
aatgatgagccactagtttatttggacaatgcagcaacgacccaaaagccaaggcaggtc
ttagaagcggtcttggcttattatgaaaaggataatgctaatgtccatcgtggagttcat
acacttgctgagcgagcaacgacggcttatgaagctgcgcgtgaacgaattcgctccttt
atccatgctgcttcaacgaaagaagttctctttacgagaggtgcgacgactggtctcaat
tgggtagcaaactatgccaaaagtgtgttacagccaggggatgaggtgttgatttctgtt
atggagcatcattctaatattattccttggcaagaagcttgtaagaaaacaggtgctaga
ttgatttatgcttatctgaaaaatggcatgctagaccttgctgaccttcaatcaaaatta
actaaaaagacacggtttgttgcgctggctcatgtttctaatgtactaggtgtgatgaat
cctataaaagaaatagctgggatggttcatcaagtaggagcacttttggtggtggatggt
gctcaatcaatcccacacgtaaagattgatgttcaagacttggatgttgatttttttgcg
ttttcaggtcacaagatgttaggtcctactggcattggtgttctctatggtaaagaagaa
ttcctgaagaaaatgtctccgattgaatttggtggagaaatgattgattttgtctatgaa
caggatgcgacatggaaagagcttccttggaaatttgaggcaggtacacctaatatagct
ggtgctattggcctggctgcagccattgactatttagacaacatcgggatggcaacggtt
catcagtatgagcaggacttgatagcttatctatttccaaaattacaagctgttaagggt
cttactatttatggttcagaaaacgtggatcagcgatcaggtgtcatttcttttaatcta
acggggcttcatcctcatgatgtagcaaccgctctagattatgaaggtgtggctgtccgg
gctggtcatcactgcgctcaacctttgttgagttacctaggagtaccagcaactgttcga
gctagtttttatatatacaataccaaagcggattgcgacaagctcgttgaagctttgaag
aaaacaaaggagtttttcaatggcactttctaa
DBGET
integrated database retrieval system
