Streptococcus intermedius JTH08: SCIM_0347
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Entry
SCIM_0347 CDS
T02156
Symbol
rheB
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
sie
Streptococcus intermedius JTH08
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sie03019
]
SCIM_0347 (rheB)
03009 Ribosome biogenesis [BR:
sie03009
]
SCIM_0347 (rheB)
Enzymes [BR:
sie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCIM_0347 (rheB)
Messenger RNA biogenesis [BR:
sie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCIM_0347 (rheB)
Ribosome biogenesis [BR:
sie03009
]
Prokaryotic type
rRNA helicases
SCIM_0347 (rheB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
BAM23001
LinkDB
All DBs
Position
399779..401122
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AA seq
447 aa
AA seq
DB search
MKFTEFKFKDYIQEALLDLNFFEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF
QKINEDVENVQAVITAPSRELARQIYQAACQIAAFSDKEIRVANYVGGTDKSRQIGKLTS
SQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADVTLDMGFLITVDKIASSLPKDLQF
LVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVISDTIDNWLISTKGRDRNAQIYEITQLL
QPYLAMIFVNTKTRADELYSYLTTQGLKVAKIHGDIAPRERKRIMNQVKKLDFEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEKL
GIHFIPKMIKNGEFQDTYDRDRRANREKTPEKLDTEMIGLVKKKKKKIKPGYKKKIQWAV
NEKRRKTKRAESRARGRAERRAKRQQF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagaatttaagtttaaagattatattcaagaggcattattagatttgaac
tttttcgaggcgacagaagtacaggaaaaattgattccaatcgtacttgcgggtcgagat
ctagttggagagtccaaaacaggttcagggaaaacccacacttttttattaccaattttt
caaaagattaatgaggatgtagagaacgttcaggctgtcattacagctcccagtcgtgaa
ttagctaggcaaatttatcaagccgcatgtcagattgctgctttttctgataaggaaatt
cgagtggctaattatgttggagggactgataaaagtcgtcaaattgggaaattaacttct
agtcagccgcatattgtcattggcacgccgggtcgcatttatgatttggtagcctcaggt
gatttagctattcataaggcacatacatttgtagtggatgaagctgatgtgacacttgat
atgggatttttgataacagtagataagattgcttccagtctgccaaaagatttgcaattt
cttgttttttctgcgaccattccgcaaaaattgcaaccatttttaaaaaaatacctgtca
aatcctgttatcgagcaaatcaagaccaaaacagttatttcagatactattgacaattgg
ttgatttccacaaaaggccgtgataggaatgcgcagatttatgagataacacagctgtta
cagccttatttagcgatgatttttgtcaatactaagacacgagcggatgaattgtatagt
tatctaacaacacaggggctcaaagtggcaaagattcatggggatattgcaccgcgagaa
cgcaaacggattatgaatcaggtaaaaaaactagattttgaatatattgtggcgacagat
ttagcagcgcggggcattgatattgaaggtgtcagtcatgtcatcaatgatgcaattcca
caagatttatctttcttcgttcatcgagtaggccgaacaggtagaaatggactgtcaggg
acagcaattacactttatcagccaagcgatgattcagatatccgcgagttagagaaattg
ggtatccacttcattcctaaaatgattaaaaatggcgagtttcaagatacctatgatcgg
gatcgtcgtgcgaatcgtgaaaaaacaccggagaaattggacacagaaatgattggcttg
gtcaaaaagaaaaagaagaaaattaaaccgggttataagaagaagattcaatgggccgtc
aatgaaaaacgccgtaagactaaacgtgcggaaagtcgtgcacgcgggcgtgcagaacga
agagccaagcgccaacagttttag
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