Streptococcus intermedius JTH08: SCIM_0875
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Entry
SCIM_0875 CDS
T02156
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sie
Streptococcus intermedius JTH08
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sie03032
]
SCIM_0875 (topA)
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_0875 (topA)
Enzymes [BR:
sie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SCIM_0875 (topA)
DNA replication proteins [BR:
sie03032
]
Prokaryotic type
DNA Topoisomerases
SCIM_0875 (topA)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SCIM_0875 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF2996
Toprim_4
RH_dom
HypA
Motif
Other DBs
NCBI-ProteinID:
BAM23529
LinkDB
All DBs
Position
complement(1006766..1008859)
Genome browser
AA seq
697 aa
AA seq
DB search
MFRLATKTKKKTIAKKNLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSTMSVDFE
NNYEPEYINIRGKGPLINDLKKEAKKAKQVYLASDPDREGEAISWHLAHILNLDEHDKNR
VVFNEITKDAVKNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRV
QSVALKLIIDRENEINAFKPEEYWTIDGTFKKGARQFQASFYSINGKKMKLATNDDVKNV
LSQIKSDEFTVESVEKKERKRHAPLPYTTSSMQQDAANKINFRTRKTMMVAQQLYEGINI
GSGVQGLITYMRTDSTRISPVAQNEAAAFITERFGEKYSKHGSRIKNSSGAQDAHEAIRP
SSVFNTPENIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMSVKLEQNSVQFAASGSQV
KFDGYLVIYNDSDKNKMLPEMEKGDIVKRVNTNPEQHFTQPPARYSEATLIKTLEENGVG
RPSTYAPTIETIQRRYYVKLVSKRFEPTELGEIVNSLIIEFFPDIVNVKFTADMEAKLDD
VEVGKEQWQKVIDEFYQPFEKEVAKAETEMEKIQIKDEPAGFDCEVCGSPMVIKLGRYGK
FYACSNFPDCHHTKAIVKEIGVECPKCHQGQIIERKTKRNRLFYGCNRYPDCDFTSWDKP
VGRSCPKCGQYLVEKKVRGGGKQVVCSNGDYEEEKVK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgtttagattggcaacaaaaacaaagaaaaaaacaatagctaaaaaaaatctggtgatt
gtagagtcgccagctaaggcaaaaacaattgaaaaatatttaggacggaactacaaggtt
ttagctagcgtaggtcatattcgagatttgaaaaaatctacgatgtccgttgattttgaa
aataattatgagccagaatatatcaatattcgtggaaagggtcctcttatcaatgacttg
aaaaaagaagctaaaaaggctaaacaagtctatcttgcgagcgacccagatcgagaagga
gaagctatttcttggcatttggctcatattctaaatctggatgaacatgataaaaatcgc
gttgttttcaacgaaattacgaaagatgcagttaaaaatgcttttaaagaaccacgtcaa
attgatatggatttggtagatgctcaacaagctcgtcgtgtacttgaccgtattgtaggg
tattctatttctccgattctctggaaaaaagtcaagaaggggttatcggctggacgtgta
caatctgttgctttgaagctcatcattgatcgtgaaaacgaaattaatgcttttaagcca
gaagaatattggacgattgatggaacgttcaagaaaggtgctcggcaatttcaagcaagc
ttttatagtataaatggcaagaaaatgaaacttgctaccaacgatgatgtcaaaaatgtc
ctttctcaaatcaagagtgatgaatttaccgtagaaagtgttgagaaaaaggaacgcaag
cgccatgctccactaccttatactacatcatctatgcagcaagacgctgctaataaaatc
aatttccgaactcggaaaactatgatggtcgctcaacagctctacgaaggaatcaatatt
ggttcgggtgtgcaaggtttgattacttatatgcgtacagattctactcgtattagccca
gtggctcaaaatgaagctgcggcttttattacagagcgttttggcgaaaaatattctaaa
catggtagtagaattaaaaattcttctggtgcacaagatgctcatgaagcgattcgtcca
tcgagtgtgttcaatactcccgaaaatattgctaaatatctagataaagatcaattaaaa
ttgtatacattgatttggaatcggtttgtggctagtcaaatgacagcagcggtatttgac
actatgagtgtgaaattagagcaaaatagtgttcagtttgctgcaagtggtagtcaagtt
aaatttgacggttatctagttatttacaacgattctgataagaataaaatgttacctgag
atggaaaaaggtgacatagtgaagcgagttaacaccaatcctgaacagcattttactcaa
ccaccagcacgttattcagaagcaactttaattaagaccttggaggagaatggcgttggg
cgcccatcaacttatgcaccaacgattgaaactattcaaagacgctactatgtaaaacta
gtttccaaacgctttgaaccaaccgaattgggagaaattgtgaattcattgattattgaa
ttcttcccagatattgtcaatgtgaagtttaccgctgatatggaagccaaattggatgat
gtagaagtcggaaaagaacaatggcaaaaggttattgacgagttttaccagccttttgaa
aaggaagtagctaaggctgagactgaaatggagaaaatccaaatcaaggatgagccagct
ggttttgattgtgaagtttgtggaagtcctatggttatcaagttggggcgttatggtaaa
ttctatgcttgtagcaatttccctgattgtcaccataccaaagctattgtcaaagaaata
ggcgtagagtgtcctaaatgtcatcaaggacaaattattgagcgtaaaaccaaacgaaac
cgccttttctatggctgcaatcgttatccagattgtgatttcacgtcctgggataaacca
gttggccgttcttgtccaaaatgtggtcaataccttgtcgaaaagaaagttcgtggtgga
ggcaagcaagttgtctgcagcaacggggattacgaagaagaaaaagtaaaatag
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