Streptococcus intermedius JTH08: SCIM_0915 Help Entry SCIM_0915         CDS       T02156                                  Symbol vacB Name (GenBank) VacB/Rnb family exoribonuclease   KO K12573   ribonuclease R [EC:3.1.13.1] Organism sie  Streptococcus intermedius JTH08 Pathway sie03018   RNA degradation Brite KEGG Orthology (KO) [BR:sie00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     SCIM_0915 (vacB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sie03019]     SCIM_0915 (vacB)    03016 Transfer RNA biogenesis [BR:sie03016]     SCIM_0915 (vacB) Enzymes [BR:sie01000]  3. Hydrolases   3.1  Acting on ester bonds    3.1.13  Exoribonucleases producing 5'-phosphomonoesters     3.1.13.1  exoribonuclease II      SCIM_0915 (vacB) Messenger RNA biogenesis [BR:sie03019]  Prokaryotic type   Bacterial mRNA degradation factors    RNA degradosome components     Ribonucreases      SCIM_0915 (vacB) Transfer RNA biogenesis [BR:sie03016]  Prokaryotic type   tRNA degradation factors    SCIM_0915 (vacB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNB CSD2 OB_RNB S1 RNase_II_C_S1 S1CSD-TOTE-2 HTH_24 CSD Motif Other DBs NCBI-ProteinID:  BAM23569 LinkDB All DBs Position complement(1050700..1053039) Genome browser AA seq 779 aa AA seqDB search MKEEILSYLREKKEASMDELAQRLGKEKAKDFRNLVQMISEMERKRQLTFSNAGKIQIRK EKQKLTLKGTFHAHKNGFGFVTLNEEEDDLFIGRNDVNYAIDGDRVEVVITKVADRSRGI SAEAKIIDVLEHSLKTAVGQLILDEEKPKYAGYIRSKNQKISQPIYIKKPALVLDGTEIL KVEIDKYPTKKHDFFVATILDVVGHKDDPGIDVLEVLESMDIVSEFPERVLKEASAIPDM PSKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSE LDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDQKGRVVKHTVT QTVIKTAFRMTYSDVNDIITGDKEKRAAFKTIVPSIEQMTELHAILETMRFKRGALNFDT KEAKILVNKTGRPVDIILRQRGVAERMIESFMLVANETVAEHFARLNLPFLYRIHEEPKA EKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQARYSE HNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMMRDYGHSLKIADHFEQVIPGIASQSSSRE RRAIEAEREVEAMKKAEFMEEFVGEEFDGIVSSIVKFGLFVELSNTVEGLIHVANLPEFF HYNERNLTLQGEKSGVVFRVGQRIRIKLVRSDKATGEIDFEYLPSEYDVIEKKKHSKFKQ DRRQQSYRGDGERKSKSSKGIISRDKKSKKSQGKKPFYKEMTKKGSKNGKRRGKGRRSK NT seq 2340 nt NT seq  +upstreamnt  +downstreamnt atgaaagaagaaattttaagttatttaagagaaaaaaaagaagctagtatggatgagctg gcacaaagattaggaaaagaaaaagcaaaagactttagaaatttagttcagatgatttct gaaatggagcgaaaacgtcaattgacctttagcaatgctgggaaaattcagattcgtaaa gaaaagcaaaagcttaccttgaaaggtacctttcatgcccataaaaatggctttggtttt gtaaccttaaatgaagaagaggatgatctttttattggacgtaatgatgtcaactatgcg attgatggtgatagggtagaagttgtaattactaaggttgcagatcgtagcaggggaata tctgctgaagcgaaaattatcgatgttttggaacacagtttgaaaacagcagtgggtcag cttattttggatgaagagaaacctaaatatgctggttatattcggtcaaaaaatcagaaa atatctcaacctatttatattaagaaaccggctttggttttggatgggacagagatttta aaagtagagattgataagtacccgactaaaaaacatgacttttttgtagctactattttg gatgtagtgggtcacaaggatgatccagggattgatgttctggaagttttggagtccatg gacattgtgtctgagtttccagaaagagttttgaaagaagcatcagcaattccggatatg ccatctaaaaaggattttgaaggtcgtttagatctgcgtaatgaaattacctttactatt gatggggcggatgctaaagatttggatgatgcagttcatatcaagaaactatcaaatgga cattttgaactgggagttcatattgcagatgtttcttactatgttcaagaaggttctgaa ttggataaggaagcgctcaatcgagcaacatctgtttatgtgacggatcgagtagtacct atgctgcctgaacgcctatccaacggtatctgttcactcaatcctaatgtagatcggctg acgcaatcggctatcatggagattgatcaaaaagggcgagttgttaagcatactgttact caaacagtcattaagactgcttttcgtatgacctatagcgatgtgaatgatataattaca ggagacaaggaaaaacgagcagcatttaaaacaattgttccaagtatagagcaaatgaca gagcttcatgctattttagaaacgatgcgtttcaagcgaggagcccttaattttgatacg aaagaggctaaaatcttagttaataaaacggggcgcccagtagatattattttacgccag cgcggagttgcggaacgtatgatcgagtcatttatgttggtcgcaaatgaaacagtggca gagcattttgccagattaaacctcccctttctctatcggattcacgaagaacctaaggct gagaaagtccagaagtttattgattatgcatctacctttggagttcgagtatatgggacg gctaattctataagtcaatctgctcttcaagatattatgaaggcggtacatggtcagccc tatgaagaagtgctatctatgatgcttttgcgctctatgcagcaggctcgttactcagaa cacaaccacggccattatggcctagccgccgagttttatacccactttaccagtccaatc cgccgttatccagaccttttggttcatcgcatgatgcgtgattatggccattctttaaaa atagcagatcattttgagcaagtcattccaggtattgctagtcagtcatccagtcgggaa cggcgagcgattgaagcggagcgagaagtagaagctatgaaaaaggctgagtttatggaa gagtttgtgggagaagaatttgatggtattgtgtcgagtatagtcaaattcggtctattt gtcgaactttcaaacacagttgaaggtttgattcatgtagccaacttgccagaatttttc cactacaatgaacgtaatctaactttgcagggtgaaaaatccggtgttgtttttcgagtc ggccaacgaattcgcattaagttagttcgatcggataaagcgactggtgagattgacttt gaatacctacctagtgaatatgatgtaattgaaaagaaaaaacactccaagttcaagcaa gacagacgtcaacagtcttatcgcggtgacggagagcgaaagagcaaatcttcaaaagga atcatttctagggataagaaatcaaagaaaagccaagggaagaaaccattttataaagaa atgactaagaaaggaagcaagaatggcaaaaggagagggaaaggtcgtcgctcaaaataa

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