Streptococcus intermedius JTH08: SCIM_1006
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Entry
SCIM_1006 CDS
T02156
Name
(GenBank) metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCIM_1006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sie03019
]
SCIM_1006
Messenger RNA biogenesis [BR:
sie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCIM_1006
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SUFBD_core
P8
ODP
Motif
Other DBs
NCBI-ProteinID:
BAM23660
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All DBs
Position
complement(1148333..1149994)
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AA seq
553 aa
AA seq
DB search
MSNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKD
RIAGVFLTHGHADAIGALPYLLAEIKVPVFGSELTIELAKLFVKGNDTVKKFNNFHVIDE
DTEIDFGDTVVSFFKTTHSIPESLGIILKTPEGNIVYTGDFKFDQTASQSYATDFARLAE
IGREGVLALLSDSANADSSIQVASESEVAKEISDTIGDWDGRVIVAAVASNLSRIQQVFE
AAARTGRRVVLTGFDVENIVRTAIRLKKLSLVDERLLIKPKEMSKFEDHELIILETGRMG
EPINGLRKMSIGRHRYVEIKEGDLIYIVTTPSIAKEALVARVENMIYQAGGVVKLITQDL
RVSGHGNERDLQLMLNLLQPKFLFPIQGEYRELAAHAKAAMAVGMLPENIFIPKRGSIME
YEKGDFLPAGAVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNRRDKKIISR
AKIHTRGFVYAKKSRDILRESADLINKTVEDYLAKDNFDWGELKGAVRDNLAKYLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaaattgattgctttgggcggtgtacgtgaaaatggaaaaaatctttac
atcgctgaagtggatgaatctatttttatccttgatgtcggactaaagtatccggaaaat
gaacagcttggtgtggactttgtcattccaaatatggactatttatttgaaaataaggac
cgcattgcaggagtctttttgacacacggtcatgcagacgcgattggtgctctgccttat
ttattggcggaaataaaggtacctgtatttggttcggaactgacgattgagctggccaag
ttatttgtcaaaggaaatgatacagtcaaaaaattcaataattttcatgtgattgatgaa
gatacagagattgactttggagatacggttgtgtctttctttaaaacaacacactcaatt
ccagagagtttaggaattattttgaaaacgcctgaaggcaatattgtttacacaggtgat
ttcaagtttgatcaaacagctagccagtcttatgcgacagattttgctcgtttggcagag
attggtcgcgaaggtgtcctagctcttcttagtgattctgccaatgcggatagtagtatt
caagtggcaagtgagagtgaagttgcaaaggaaattagtgatacgattggggattgggat
gggcgcgtgattgttgcggcagttgcgagcaatctttctcgtattcagcaagtttttgaa
gcagctgctagaacgggacgtcgtgttgtattaactggatttgatgttgaaaatatcgtt
cgtacagctattcgcttgaagaaattatcccttgtagatgaacgcttgctgattaaacct
aaagaaatgtctaagtttgaagatcatgaattgatcattttggaaactggtcgaatgggt
gagcccatcaatgggttgcgtaagatgtctattggtcgtcaccgctatgtagaaattaag
gaaggcgatttgatttatattgttaccacaccgtctatcgcaaaagaagccttggtggca
cgtgtagaaaatatgatctaccaagcaggtggtgttgttaaattgattacgcaagattta
cgagtgtccggtcatggaaatgaacgcgatttgcaactgatgttaaatctcttgcagcca
aaattcttgtttccgattcaaggagaataccgtgaattagcagcgcatgctaaagctgcg
atggctgttggaatgttgccagagaacatttttattccaaaacgtggtagcattatggaa
tatgaaaaaggcgattttttacctgctggagcagtacctgctggtgacgtcatgattgac
ggaaatgcgattggtgatgtgggaaatattgttctgcgtgaccgtaaagttttatccgag
gacggtatctttatcgtagcgattacagtgaaccgacgtgataagaagattatttccaga
gcgaagattcatacacgtggttttgtttatgccaagaaaagtcgcgatattttacgtgaa
agtgctgatttaatcaataagacagttgaagattacctcgcaaaggataattttgattgg
ggcgaattgaagggggctgtacgtgacaatcttgcgaaatacctctttgagcaaacgaaa
cgtcggccagccattttaccagttgtaatggaagtgcgttaa
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