Streptococcus intermedius JTH08: SCIM_1051
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Entry
SCIM_1051 CDS
T02156
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sie
Streptococcus intermedius JTH08
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sie03016
]
SCIM_1051 (truB)
Enzymes [BR:
sie01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SCIM_1051 (truB)
Transfer RNA biogenesis [BR:
sie03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SCIM_1051 (truB)
Prokaryotic type
SCIM_1051 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
BAM23705
LinkDB
All DBs
Position
complement(1192678..1193556)
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AA seq
292 aa
AA seq
DB search
MNGIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQ
EEGKVYEGEITLGCSTTTEDASGDILEWTPVTELLEEALIDEAMESMIGEICQIPPMYSA
VKVNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEEARFRFRVKCSKGTYVRTL
SVDLGAKLGFASHMSKLTRTSSAGMSLDDALTLDEIAERVEVEDFSFLQPLELGIGDLVK
IDLTKDQAEDVRFGRFIDVNSNETQVAGFFQGKLLAILEKRDEEYKPRKVFL
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaattatcaacctaagaaaagaagcgggcatgacctcgcatgatgcggtattt
aagctgcgcaagattttaaaaaccaagaaaatcggtcatgggggcaccttggatccagat
gtggtaggggtgcttccgattgctgtgggcaaggcgacacgtttggtcgagttcatgcag
gaggaaggcaaggtctacgagggggagattactctgggttgctcaacaacgacagaggat
gccagcggagacatcctagagtggacgccagtgacggaacttttagaagaagcccttatc
gatgaagctatggagtccatgattggtgagatttgccagattccgcctatgtactcagca
gtcaaggtcaatggccgcaagctttatgagtatgctcgtgcgggtcaagaagtggagcgg
ccagagcggcaggtgactatctatagctttgagcgcaccagtccgatttcctacgaagat
gaggaagcccgctttcgttttcgagtgaaatgcagcaaggggacctatgtccgaaccctg
tctgttgatttgggagccaagcttggctttgccagtcacatgtccaagctgacacggact
tcctctgcaggtatgagcttagatgatgctttgaccctggatgaaatagcagagcgagta
gaagtggaagatttctcctttctccaaccactcgaattgggtataggggatttggttaag
atagaccttacaaaagatcaggcagaggatgtgcgatttggtcgatttattgatgtgaat
tctaatgaaactcaagtagctggatttttccaggggaaattgcttgctattctagaaaag
cgtgacgaagaatataaacctagaaaagtgtttctttaa
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