Streptococcus intermedius JTH08: SCIM_1060
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Entry
SCIM_1060 CDS
T02156
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03420
Nucleotide excision repair
sie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCIM_1060 (pcrA)
03430 Mismatch repair
SCIM_1060 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_1060 (pcrA)
Enzymes [BR:
sie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCIM_1060 (pcrA)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIM_1060 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
SCIM_1060 (pcrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
Baseplate_N
Pox_VLTF3
Motif
Other DBs
NCBI-ProteinID:
BAM23714
LinkDB
All DBs
Position
complement(1203412..1205745)
Genome browser
AA seq
777 aa
AA seq
DB search
MSDFCYNRIIDFERGKKMNPLLTGMNDRQAEAVQTTDGPLLIMAGAGSGKTRVLTHRIAY
LIDEKLVNPWNILAITFTNKAAREMKERAFSLNPATEDCLIATFHSMCVRILRREADHIG
YNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAKNDLIDEVAYENMAGDM
YTEIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPDVLTYYQQRYQYVHVDEYQDT
NHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPEAKVVLLEENYRS
TKTILQAANEVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLTREGY
SHKDFAVLYRTNAQSRTVEEALLKANIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNI
SYERVVNEPKRGVGPGTVEKIRNFAASQNVSLLEASSQIMLSLVKGKAAQSVFDFANLIL
NLRERLDELTVTELVEIVLEKTGYTEQLVAQGTLESQARIENIEEFLSVTKNFDEHSEND
TEETGLDKLSRFLNDLALVADTDDAGTQESSEVTLMTLHAAKGLEFPVVFIIGMEENVFP
LSRATEEEDELEEERRLAYVGITRAEKVLFLTNANSRLLYGKTNYNRPTRFLNEISSDLL
NYQGLARPANTSFKASYVNGKNVQFGQGTSLAQALQERKRQVGPSSISSSQLPFGKNIEA
TQPDLNWAIGDIAHHKKWGDGTVLEVSGSGSSLELKINFPEVGLKKLLASVAPIEKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatttttgttataatagaatcattgactttgaaagaggaaaaaagatgaatccc
ttattaactggtatgaatgatcggcaggcggaggcagttcaaacgacagacgggcctttg
ctgattatggcgggggctggttcgggtaagactcgggtactgacccaccgtattgcttat
ttgattgatgaaaaattagttaacccctggaatattttggcgattacctttaccaataaa
gcagctagggaaatgaaggagcgggcattttctttaaatccagcaactgaggattgcttg
attgcgacctttcactcgatgtgtgtgcgcatcctgcggcgggaagcagatcatattggt
tacaatcgcaattttaccattgttgatccgggagagcagcggaccttgatgaagcggatt
ctcaaaaatctcaatctcgatcctaagaagtggaatgagcgcgctattctgggaaccatt
tccaatgccaagaacgacctgattgatgaggtggcctatgagaatatggctggtgatatg
tatacagaaattgtggctaagtgctatacagcctatcaaaaggaactgcgccagtcagag
gctatggactttgatgatttgattatgctgaccctgcggctttttgaccaaaatcctgat
gtcctgacctactaccagcaacgttatcagtatgttcatgtcgatgagtatcaggatact
aaccacgcccagtaccagctggtcaagctcttggcttctcgttttaagaatatctgtgtg
gttggagatgccgaccagtctatctatggctggcggggagccgacatgcaaaatatcttg
gattttgaaaaagattatcctgaagctaaagtcgttcttctagaagaaaactatcgctct
accaagaccatccttcaggcagctaatgaggttattcgaaataaccgcaatcgccgtcct
aaaaatctctggactcagaatgaagatggcgaagaaattgtctactatcgagctaatgac
gagcaggatgaagctctctttgtcgctcgaaccattgatcagctgacccgagaaggctac
agtcataaggattttgcagttctttaccggaccaatgctcaatcacggacagtggaagaa
gccctccttaaggccaatattccttataccatggtggggggcaccaaattctatagccgt
aaggaaatacgggatgtcattagctatctaaatctcattgccaaccctagtgataacatc
agctatgagcgggtggtgaatgagcccaagcgtggtgttggtccgggaacagtagagaag
attcggaattttgcagccagtcaaaacgtatctcttttagaagcctcctcacagattatg
ctttcacttgtcaaagggaaagctgctcagtcagtttttgactttgccaatctcattttg
aatcttcgtgagcgactagatgagttgacggtgacagaattggtggaaatagttcttgaa
aagacgggttatactgaacaattagtagctcaagggacgctggaaagtcaggctcgaatt
gaaaatattgaagaattcttatcggttaccaaaaattttgatgaacattctgaaaatgat
acagaagaaacggggcttgataagttaagccgtttccttaatgatctggctttggttgcg
gacacagatgacgctggcactcaggaaagctcagaagtgacacttatgacgctacatgct
gccaaggggttagaatttccagtggttttcattatcggtatggaagaaaatgtcttccca
cttagtcgggcaactgaagaggaagacgaattagaggaagagcgccgattagcctatgtt
ggaattactcgtgctgaaaaagtcttgtttctgaccaatgctaactcgcgtttgctgtat
gggaaaactaattataatcgaccaactcgttttctcaatgaaattagttcggatttattg
aattaccaaggattagctcgaccggccaatacatcttttaaagcttcctatgtaaatgga
aaaaacgtccagtttggtcaagggacaagtctcgctcaagcattacaagaacgcaaacgg
caagttggaccaagtagtatttcctcaagtcagttgccatttggcaagaatatagaggct
actcaaccagatttgaattgggctatcggtgatattgcgcaccataaaaaatggggagat
ggaactgtattggaggtgtcaggtagcggtagtagcctagaactaaaaattaattttcca
gaggttggattaaagaaattgttagcaagtgttgcaccaattgagaaaaaataa
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