Streptococcus intermedius JTH08: SCIM_1066
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Entry
SCIM_1066 CDS
T02156
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03410
Base excision repair
sie03430
Mismatch repair
sie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCIM_1066 (recJ)
03430 Mismatch repair
SCIM_1066 (recJ)
03440 Homologous recombination
SCIM_1066 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_1066 (recJ)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SCIM_1066 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SCIM_1066 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCIM_1066 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Toprim
AlaDh_PNT_C
AAA_assoc_C
DUF5760
Motif
Other DBs
NCBI-ProteinID:
BAM23720
LinkDB
All DBs
Position
complement(1215026..1217260)
Genome browser
AA seq
744 aa
AA seq
DB search
MITSKYDWQIATNFSDEGFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDKLHD
PYELHDMEKAVVRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRF
TDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEELPK
AYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEMQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQITPRLNALGRLDDPNPAIEL
LTGFDEEEARDIALMINQKNDERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIV
AGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDPHRELFVAFGGHAGAAGMTLD
ASRLEELSQVLTAYIENNQLDLSTKNELFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLS
VNKWNGQTSLQLMLVDARVNGIQLFNIRGKNARLPENVPILRFSEEIPDLGNSRSVVVYD
VPNQLEQLKMIIQQGHFEAIYFKNEIAHPYYLTGFGTRAQFAKLYKTIYQFPEFDIRYKL
KKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSHIYQELKKMVKE
QELMALGTVQEIYDYLMEKDECSN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgattacatcaaaatatgattggcaaattgctacaaatttttcagatgagggctttatc
aaacaagctcaaaaactcggattggaaccttcggtagccaatttggtataccagagaggg
attcagacagaagaagcactgcgagactttctagaagctagtttagacaagctacacgat
ccttatgaacttcatgatatggagaaggcggtagtacgcattcgtcaagcgattgaaaac
tatgagcagattttgatctatggcgattatgatgcagatgggatgacttcagcttctatt
gttaaagaagcgttagaacaattgggagcggagtgtcaagtctatttacccaatcgattt
acagatggttatggacctaatgctagtgtttacaagtattttattgaaaatcaagaagtc
tcactcattattacagtggacaatggtgttgcaggacatgaagcaattgagttagcccag
tccatgggagtggatgtcatcgtaacagatcaccactctatgcctgaggagctgccaaag
gcctatgctatcgtccatccggaacatagcggagcagattaccctttcaagcatctggct
ggctgtggggtggcttttaagttagcgactgcccttttagaggaaatgcagattgagttg
ttggatctagtcgctatcggcactattgcggatatggtcagcttgacaggtgagaatcgg
attttggtcaaatatggcttatctattttgaaaaacactcagcgcatcggcttgcaagaa
ctttttaagatttcgggcattcaggaagatgaagtagatgaagaaatagttggttttcag
ataactcctagactcaatgctctaggtcgattggatgatccaaatcctgctattgaactt
ctgactggttttgatgaagaagaagcacgtgacatcgccctgatgattaatcaaaaaaat
gacgaacgtaaggagatggtgcagcatatctatgatgaagctaagtttatgattgatcct
aagaagcctgttcaggttctagctggcaagggttggaatccaggtgttttgggaattgta
gcagggcgacttttagaagagttgcatcagccgatcatcgtgctgaatattgaaaatggt
ttagcaaaaggtagtgctcgcagtattgaagcagttgatatttttgaagctctagatcct
caccgagagttatttgtagcttttggtgggcatgctggggcagctggcatgactcttgac
gccagtcgattagaagaactcagtcaggttttgacggcctatattgaaaataatcagctg
gatttgtctactaagaatgaactttttttggatgaagaactagctttgccagatctgacg
ctggaaactcttaaaaactttgaaaaacttgctccttttggtatggataataaaaaacct
gttttctatttaaaagattttaaagttgaaaatgctcgtactatgggggcaggaaatgct
cacctgaaactaaaaatttctcaggctgatgttgcttttgatgtaatagcttttggacaa
ggcgaacttgccacagaattttctcaaactaaaaatttagagttagcagtgactctgtcg
gtcaacaaatggaatggtcagactagtctgcaacttatgttggtagacgctcgagtcaac
ggaattcagctctttaatattcgaggtaaaaatgctcgcttacctgaaaatgtacctatt
ctgcgtttttcagaagaaatacctgatttgggaaacagtagatcagttgtggtctatgac
gtccccaatcaactagaacaactaaaaatgattattcaacaaggacattttgaagccatt
tactttaaaaatgagattgctcacccctattatctgacaggttttggaacgagagcccaa
tttgccaaactctataaaacgatttatcagtttccggagtttgatatacgttataaacta
aaaaagttggctgcttatctcaacattgattcaattctactcataaagatgattcaaatt
tttgaagaactgggttttgtaacggttcaagatggagtgatgcgagttaacaaggaagca
gaaaaaaaggctattgagagtagccatatttatcaagaacttaaaaaaatggtcaaggag
caggagctgatggctctaggaactgttcaagaaatttatgattatctgatggaaaaggat
gaatgttcaaactag
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