Streptococcus intermedius JTH08: SCIM_1153
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Entry
SCIM_1153 CDS
T02156
Symbol
rheB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCIM_1153 (rheB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sie03019
]
SCIM_1153 (rheB)
03009 Ribosome biogenesis [BR:
sie03009
]
SCIM_1153 (rheB)
Enzymes [BR:
sie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCIM_1153 (rheB)
Messenger RNA biogenesis [BR:
sie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCIM_1153 (rheB)
Ribosome biogenesis [BR:
sie03009
]
Prokaryotic type
rRNA helicases
SCIM_1153 (rheB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAM23807
LinkDB
All DBs
Position
complement(1325072..1326616)
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AA seq
514 aa
AA seq
DB search
MKFNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL
EKINTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE
LSIVFGRTKRRVDELTRGFKLRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIESLTKK
RMKGMKPASAEEAFQAKKKVALKKIERDFADEAIRSNFEKFGKDARKLAAKFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVSGANKGNRNHKGGNRRDRGNRRDNYKKGARNE
HFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaataaattccatttgtctgctgaattgttagcagaggttgaaaaagctggc
tttgttgaagccagcccaatccaagaacaaacaatcccgcttgctatggagggaaaagat
gtgattggacaagcgcagactggtacaggaaagacagctgcttttggttttccaactctt
gaaaaaattaacacagaaaatccctttatccaagcgttagttattgcaccaactcgtgag
ttagctgttcaaagtcaggaagagctctttcgctttggccgtagtaaaggagtgaaagtt
cgatcagtttatggtggctctagcattgaaaagcaaattaaagccttgaaatcaggcgcc
cacattgtcgtaggaaccccagggcgtttattagacctcattaagcgcaaggcgttgaaa
ctcaatcatgtagaaattcttattttggatgaagcagacgaaatgctcaatatgggcttc
ttagaagacattgaagcaatcatctcacgcgtaccagaagaacgccaaaccttgctcttt
tctgcgacgatgccagatgctatcaagcggattggtgtgaagtttatgaaagatccaaca
catgtcaagattgcagctaaagaattgacaactgagctggtggatcaatattatattcgc
gtaaaggaaaatgaaaaatttgataccatgacacgcctgatggatgtggaacagcctgag
ctatctatcgtctttggtcggaccaagcgacgggtggatgagctgactcgtgggtttaaa
ctccgtggtttccgagcagagggtatccatggtgatttggaccaaggcaagcgcctccgc
gtcctccgagactttaaaaacggcaatctggatgtcttggtggcgacagatgtagctgca
cgtggattagatatttctggtgttacccatgtttacaattacgatattccacaagacccc
gaaagttatgttcatcgtatcggacggacaggtcgtgctggtaaatctggtcagtctatt
acatttgtagcgccaaatgaaatgggttatcttcaaatcattgaaagcttaaccaaaaaa
cgtatgaaaggtatgaagccagcatctgcagaagaggcttttcaagctaagaaaaaagtt
gcactcaaaaagattgaacgagattttgcagatgaagctattcgtagcaattttgagaaa
tttggtaaggatgctcgtaagctagcggctaaatttacaccggaagaattagccttatat
attttgagtctgacagtacaggacccagatactcttccagaagtggaaattgcgcgcgaa
aaaccactgccgtttaaatatgtttctggtgccaataagggaaatcggaatcataaaggt
ggtaatcgtcgtgatcgtggtaatagacgcgataattacaaaaaaggagctcgcaatgag
cattttgacaaggaaaaacgctaccgtaaagatcacaaaaaacctcgcaatacttcaagc
gaaaagaaaactggctttgtgattcggaataaaggggataaataa
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