Streptococcus intermedius JTH08: SCIM_1401
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Entry
SCIM_1401 CDS
T02156
Symbol
polC
Name
(GenBank) DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03030
DNA replication
sie03430
Mismatch repair
sie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCIM_1401 (polC)
03430 Mismatch repair
SCIM_1401 (polC)
03440 Homologous recombination
SCIM_1401 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sie03032
]
SCIM_1401 (polC)
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_1401 (polC)
Enzymes [BR:
sie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCIM_1401 (polC)
DNA replication proteins [BR:
sie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SCIM_1401 (polC)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SCIM_1401 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
DEDDh_C
HHH_3
Rv2179c-like
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
BAM24054
LinkDB
All DBs
Position
complement(1593347..1597741)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSSTFEILMNQINMPLDMRQSSAFLHAEIEQVLVHKVSHIWEFHFSFEEILPIDIFQELK
KCLKEEFSKTGNQAVFEIRTINKDFTDELLQAYYQEAFTEGPCTSQGFRSMYQGLKVHAE
GNQLVIEGPSSIDTDHFQKIHLPNLAKQLVKFGFPQFQCQVKASDALTQQQVETFQAEKE
KIVQAANDEALKAIEVLQKMAAPPVEEKTSYSGFQAKKATARPKLDKAEITQMNAIQTEE
NRIVFEGMVFDLEKKVTRTGRVLINFKMTDYTSSFALQKWFKNEEEAKKYDMIKKNSWLR
VRGNIEMNNFTHDLTMNVQDVQEVVHYDRKDLMPEGEKRIEFHAHTNMSTMDALPEVEDL
IATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIYGMEANIVEDRVPITYNEIDME
LGEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTDLTGI
TDEHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLE
FARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFIRDVAEKRGITNLNK
LNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTKYFEGVPRIPRTVLDAHRE
GLVLGTACSEGEVFDAVVSQGLDAAVEVAKYYDFIEIMPPAIYAPLIAKEQVKDMEELHT
IIKNLIEVGKRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPAP
LPKAHFRTTNEMLDEFAFLGDELARQVVIENPNQLALTFEPIEVVKGDLYTPFIEKSEEK
VAELTYAKAFEIYGNPLPDIVDHRIERELSSILGNGFAVIYLASQMLVQRSNKRGYLVGS
RGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMPDKDCPKCGHKLS
KNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKT
AYGFVKGYERDYGKLYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYP
ADDLTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGIDPNDIPMDDAGVMAL
FSGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWL
GNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGMWLKISDEERNA
YIAAMKENNVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRA
KAFEIKTMSGGLDAVKRRMSEIAEKRKNNDASNVEIDLYTTLEIVNEMLERGFKFGKLDL
YKSHATEFLIEEDTLIPPFSAMDGLGDNVARQLVRAREEGEFLSKTELRKRGGLSSTLVE
KMDDMGILGNMPEDNQLSLFDEFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaacgtttgaaattttaatgaatcaaatcaatatgccacttgatatgagacaa
tcaagtgcctttttacatgcagaaattgagcaagttctggtgcataaagtcagccatatc
tgggaatttcatttttcttttgaagaaattttgccgattgacatatttcaagaattgaaa
aagtgcttgaaggaagaattttctaaaacggggaatcaagcagtttttgagataaggaca
ataaacaaagatttcacagatgagctattgcaggcttattatcaagaagcttttacagaa
ggtccttgtactagtcagggatttcgcagtatgtatcaagggttgaaggtgcatgctgaa
ggaaatcaactagtgattgaaggtccttcaagcattgatacggatcattttcagaagatt
catttgccaaatttggcaaaacagttggtcaagtttggttttccacagtttcaatgtcag
gttaaggcaagcgatgctttaacacagcagcaagttgaaactttccaagctgagaaagaa
aagattgtacaagcagcgaatgatgaagctctaaaagccatagaagtgctgcagaaaatg
gcagctccacctgttgaagaaaagacaagttactctggttttcaagcgaaaaaagctact
gcacgaccaaaattggataaagctgaaatcacgcagatgaatgccattcagactgaggaa
aatcggattgtctttgaaggaatggttttcgatcttgaaaaaaaggttactcgcacaggg
cgcgtactcattaattttaagatgaccgattatacttctagctttgcgcttcagaaatgg
tttaaaaatgaagaagaagctaagaaatatgacatgattaagaaaaattcatggttgcgt
gtacgtggaaatattgaaatgaataacttcacgcatgatttgactatgaatgtacaagat
gtacaggaagtggtacattatgaccgtaaagatctcatgcctgaaggtgagaaacggatt
gaatttcatgcgcataccaatatgtcaactatggatgccctaccagaagtcgaagatttg
attgcgacagctgcgaagtgggggcataaagcagttgcgattactgaccacggcaatgtg
cagagttttcctcatggttataaagctgctaaaaaagccgggattcagttgatttatggt
atggaagccaatattgttgaagatcgtgtgcctattacttacaatgaaatagatatggag
ttgggagaagccacttatgttgtctttgacgtagaaacgactggtttgtctgctatttat
aatgatttgattcaggtggcagccagcaagatgtacaagggcaatgtcatcgcggaattt
gacgaatttattaatccaggacaccctttgagtgcgtttacgacagatttgacgggaatt
acagatgaacatgttaaaaatgcgaaaccacttgagcaagttttacaggaatttcaggaa
ttttgcaaagatacggtacttgtcgctcataatgctacctttgacgtgggctttatgaat
gtcaactatgagcgtcatggcttgccgaaaatcacccagccagtcattgacacgctggaa
tttgcccgcaacctctatccagaatacaagcggcatggtttggggcctctaactaagcgt
tttcaagtatcgcttgaccatcaccacatggccaattacgatgcggaagcaacaggacga
ctgctatttatcttcatcagagatgtagcagaaaagcgtggaattaccaatcttaataag
ttgaatacggatttggtggatgaaaattcctataaaaaagcacgagtgaaacacgctacg
atttatgtgaaaaatcaaacagggttgaagaatattttcaaattggtcagtctgtccaat
actaaatattttgaaggtgtaccacggattccgcgaacggttttggatgcgcatcgagaa
ggcttggttctaggaactgcttgttcagaaggagaagtgtttgatgcggttgtttcacag
ggtctggatgcagctgtcgaagtagcgaaatattatgactttatcgaaatcatgcctcca
gcgatttatgctccattgattgctaaagagcaggttaaggatatggaggaactgcacaca
atcatcaagaatttgattgaagttggaaaacgactagacaaaccagttctggctacggga
gatgtgcattatattgagcctgaggaagaaatttatcgggagattatcgttaggagtttg
ggacaaggtgccatgattaaccggaccataggtcacggtgaaaatgctcaaccagctccg
cttcccaaagcacatttccgtacaaccaatgaaatgctggatgaattcgcttttttaggt
gatgaactagctcgacaagtggtcattgagaatcccaatcagttggcgttaacctttgaa
ccaattgaagtggtaaaaggggacctctatacaccatttattgagaaatctgaagaaaaa
gtcgctgagttgacttatgcaaaggcttttgaaatctatggtaatccactgccagatatt
gtagatcatcgaattgaacgggaattatcctctattttagggaatggttttgccgtgatt
tacttggcttcgcaaatgcttgtacagcgttctaataaacgaggctatttagttggttcg
cgtggttcagttggctccagttttgtggcgaccatgattgggattactgaggtcaatcct
ttgtcgcctcactatgtctgtggcaaatgtcaatacagcgagttcatcacggatggctcc
tatggttctggctttgatatgccggataaggactgtccaaaatgcggccacaagctgagc
aagaatggccaggatattcctttcgagaccttccttggatttgacggggacaaagtccct
gatattgacttgaacttctctggagaggatcagcctagtgcccacttagacgttcgagac
atttttggggaggaatatgcttttcgggctggtactgttggtacagttgctgctaaaacg
gcctatggttttgtcaagggctacgagcgcgactacgggaagctctatcgggatgccgaa
gttgagcgtctggctcagggagctgccggagttaaacggacgactggacaacacccaggg
ggaattgtggttattccaaactatatggatgtctatgattttacaccagttcaataccca
gcggatgacttgactgctgaatggcaaacaacccactttaacttccacgatattgatgag
aatgtcctaaaactagatgtacttggtcatgatgatccaactatgattcggaagttacag
gatttgtcaggaattgatcccaatgatattcctatggatgatgctggcgtcatggccctc
ttttctgggacagacattctgggtgtgactcaggagcaaatcggtacgccgactggtatg
ctggggattccggagtttggaaccaactttgtacggggcatggtggatgaaactcaccca
acaactttcgcagaattacttcaattatcaggcttgtctcacggtaccgacgtatggctg
ggaaatgcacaagatttgattaagcaggggattgccgacctgtccaccgttatcggctgt
cgggacgacatcatggtttatttgatgcataagggcttagagcctaaaatggcctttacg
attatggaacgggtgcggaaaggcatgtggctcaaaatttctgacgaagaaagaaatgct
tatattgctgctatgaaagaaaataatgtaccagaatggtacattgagtcatgtggaaaa
atcaagtacatgttccccaaggcccatgcggcagcctatgttatgatggccttacgggtg
gcctatttcaaggtgcatcatccgatttattactactgtgcctacttctccatccgggcc
aaagcttttgaaattaagaccatgagtggcggacttgatgctgtcaagcgccggatgagc
gaaattgctgaaaagcgcaagaataatgacgcctccaatgtagaaattgacctttatacg
actctggaaatcgttaatgaaatgctggagcggggcttcaagttcgggaagctggatctc
tataagagccatgcaactgagtttctcatcgaagaggatacccttatcccaccattctct
gcgatggacggtctgggtgacaacgttgcccgccaattggtcagagcgcgggaagaaggc
gaattcctttctaagacagaactccgcaaacgcggtggcctctctagcaccctagtcgaa
aaaatggacgacatgggaattctgggcaatatgcccgaggacaaccagttgagtctgttt
gatgagtttttctaa
DBGET
integrated database retrieval system
