Streptococcus intermedius JTH08: SCIM_1454
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Entry
SCIM_1454 CDS
T02156
Symbol
groEL
Name
(GenBank) chaperonin large subunit GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCIM_1454 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sie03019
]
SCIM_1454 (groEL)
03110 Chaperones and folding catalysts [BR:
sie03110
]
SCIM_1454 (groEL)
03029 Mitochondrial biogenesis [BR:
sie03029
]
SCIM_1454 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sie04147
]
SCIM_1454 (groEL)
Enzymes [BR:
sie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SCIM_1454 (groEL)
Messenger RNA biogenesis [BR:
sie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SCIM_1454 (groEL)
Chaperones and folding catalysts [BR:
sie03110
]
Heat shock proteins
HSP60 / Chaperonin
SCIM_1454 (groEL)
Mitochondrial biogenesis [BR:
sie03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SCIM_1454 (groEL)
Exosome [BR:
sie04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SCIM_1454 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
SCIM_1454 (groEL)
Exosomal proteins of breast cancer cells
SCIM_1454 (groEL)
Exosomal proteins of colorectal cancer cells
SCIM_1454 (groEL)
Exosomal proteins of bladder cancer cells
SCIM_1454 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Exonuc_VIII
Motif
Other DBs
NCBI-ProteinID:
BAM24107
LinkDB
All DBs
Position
complement(1659451..1661073)
Genome browser
AA seq
540 aa
AA seq
DB search
MAKDIKFSADARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE
LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIE
TAVATAVEALKANSVPVSNKEAIAQVAAVSSRSEKVGEYISEAMEKVGNDGVITIEESKG
MDTELDVVEGMQFDRGYLSQYMVTDNEKMVADLDNPYILITDKKISNIQEILPLLENILK
TSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT
EDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGDAEAIANRVAVIKSQIESVTSEFDK
EKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEGIVSGGGTAFVNV
LDAVAALELEADEATGRNIVLRALEEPVRQIALNAGFEGSIVIDRLKNSEVGTGFNAATG
EWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAVVASQPEPASPAPAMDPSMMGGMM
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatattaaattttcagcagatgcaagaagtgctatggtacgtggtgtcgat
attttagcagataccgttaaagtaaccttaggacctaaaggacgcaatgttgttcttgag
aaatcatttggctcacccctcatcacaaatgacggtgtgactattgccaaagaaattgaa
ctcgaagatcattttgaaaatatgggcgctaagttggtgtcagaagttgcttcaaaaact
aatgatatcgctggtgacggaacaactactgcgactgtcttgacccaagccattgtccgc
gaaggaatcaaaaatgtaacggctggtgcaaacccaattggcattcgtcgtggtattgaa
acagctgttgcaacagctgttgaagctttaaaagcaaattctgttccagtttctaataaa
gaagcgattgcacaagttgctgctgtctcatcacgttctgaaaaagtcggagaatacatc
tctgaagccatggaaaaagttggcaacgacggtgtcatcactattgaagaatcaaaagga
atggacacagagctagatgttgttgaaggtatgcagtttgaccgtggctatctttctcaa
tacatggtaacagacaatgaaaaaatggttgctgatttagataatccatatatcttgatt
acagataagaagatttctaatatccaagaaattcttcctttgttggaaaatattttaaaa
acaagtcgtccgcttttgattattgcagatgatgtagatggtgaagctcttccaactctt
gtgttgaacaaaatccgtggtactttcaatgtagtcgctgtgaaagcgccaggattcggt
gaccgtcgtaaggcgatgctagaagatattgcgattttgactggcggtacagtgattaca
gaagatcttggtctggaattgaaagatgcaaccattgaagcacttggacaagcctcaaaa
gtaactgtggataaagacagcaccgttatcgttgaaggctctggtgatgctgaagcgatt
gctaaccgcgttgctgtcattaaatcgcaaattgaaagtgttacatctgaatttgacaaa
gaaaaactacaagaacgtttggcgaaattatcaggtggtgtggctgtcatcaaagtaggt
gctgcaacagaaacagaactcaaagaaatgaaacttcgcattgaagatgcccttaatgca
actcgtgccgctgttgaagaaggaattgtctcaggtggtggaacagcctttgtgaatgtt
ttagatgcagttgctgctcttgaactggaggctgatgaagcaacaggtcgcaatattgtg
cttcgtgctttggaagaaccagttcgtcaaatcgctctcaatgcaggatttgaaggctcg
atcgtcattgaccgtttgaaaaactctgaagttggtacaggatttaatgctgcaactggc
gaatgggttaacatgattgaagcagggatcattgacccagtcaaagtcactcgttctgcc
cttcaaaatgctgcgtcagtagctagccttattttaacaacagaagcagttgttgctagc
caaccagaaccagctagcccagctcccgcaatggatccaagcatgatgggcgggatgatg
taa
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