Streptococcus intermedius JTH08: SCIM_1562
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Entry
SCIM_1562 CDS
T02156
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03030
DNA replication
sie03410
Base excision repair
sie03420
Nucleotide excision repair
sie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCIM_1562 (polA)
03410 Base excision repair
SCIM_1562 (polA)
03420 Nucleotide excision repair
SCIM_1562 (polA)
03440 Homologous recombination
SCIM_1562 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sie03032
]
SCIM_1562 (polA)
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_1562 (polA)
Enzymes [BR:
sie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCIM_1562 (polA)
DNA replication proteins [BR:
sie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCIM_1562 (polA)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SCIM_1562 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIM_1562 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
TerS_N
Motif
Other DBs
NCBI-ProteinID:
BAM24214
LinkDB
All DBs
Position
complement(1770044..1772689)
Genome browser
AA seq
881 aa
AA seq
DB search
MEKKNKLLLIDGSSVAYRAFFALYNQIDRFKSPSGLHTNAIYGFHLMINHLLERVQPTHI
LVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLQHLGIHYYDLAQYEADDII
GTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEKMGIS
PVQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGIYDHIDQLKQSKMKENLIK
DKEIAFLSRKLVTIDTQAPIEIGLEDILYQGSDIKQLGRFYDEMGFKQFKQALESEVEPE
EMADIAFEEVMEVRPEMLSADDFFYFEMLGDNYHIDEMVGFAWGNAQKIYVSQDVRLLQQ
PIFKEFLENTALKVYDLKRSKVLLSRLGIELSQLAFDSRLAKYLLSTVDNNEIATIASLY
GKTKLDEDEVIYGKGAKRALPEKPILLNHLARKVAVLVETEQPMIDLLRQHDQLNLLYEM
EQPLALVLAKMEIAGIKVERETLQTMQVENERVLTQLTQEIYDLAGEEFNINSPKQLGGI
LFEKLGLPTAFTKKTKTGYSTAVDVLERLAPIAPIVEKILEYRQIAKIQSTYVMGLQDWI
LADGKIHTRYLQDLTQTGRLSSVYPNLQNIPIRLEQGRLIRKAFVPEWKDSVLLSSDYSQ
IELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGVVYG
ISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDQGYVETLFHRRREIPD
INSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALRAGRFKSRMLLQVHDEIVLE
VPANELTAIKTLVKEIMESAIELSVPLKADESAGETWYEAK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaagaacaagttattattaatagacggctcttctgtagcttatcgtgctttt
tttgcactgtacaatcaaattgatcgtttcaagagtccatcgggcttgcataccaatgct
atttacggtttccacctcatgatcaatcatctcttggagcgcgtgcagccgactcatatc
ttggtggcatttgatgcggggaagaccacctttcggacagagatgtatgctgattacaaa
ggtggtcgagctaagactccggaggaatttcgcgagcagctgccctttattcgagaaatg
ctgcagcacttgggcattcactattatgatttggctcagtacgaggcagatgacatcatc
gggactttagacaagatggctgaaaagacagctgtcccttacgatgtgaccattgtcagt
ggtgataaggatctgattcagctaacggatgataatactgtggtggagatttccaagaaa
ggtgtggctgagttcgaagaattcactccagcctacctgatggaaaagatgggaattagt
cctgttcaatttattgacctcaaggctttaatgggtgataaatcagataatattcccggt
gtgactaaaatcggagagaaaacggggctcaagcttcttttagaatatggatcgctggaa
ggtatttatgatcatattgaccaactgaaacagtctaagatgaaggaaaatctcattaag
gataaggaaatagctttcttgtctagaaagcttgtcactattgacactcaagcacccatt
gaaatcggtttagaagatattctctatcaaggatcagatattaaacaactaggtagattc
tatgatgaaatgggctttaaacaatttaagcaagcgctagaatcagaagtagagccagaa
gaaatggctgatattgcttttgaggaagtgatggaagtccgaccagagatgcttagtgca
gacgattttttctattttgagatgttaggggataactaccatatagacgagatggttggg
tttgcttggggaaatgcccagaagatttatgttagtcaagatgttcgtcttttgcagcaa
ccaattttcaaagaatttttagaaaatacagccttgaaggtttacgatttgaagcgctct
aaagtcttactcagtcgcttaggaattgaactttcacaactggcgtttgacagtcgttta
gctaagtatcttctttcaactgttgacaacaatgaaattgcaacgattgctagcctttat
ggcaagaccaaacttgatgaagatgaggtgatttatggaaaaggagctaagcgggcactg
cctgaaaagcctattttattgaatcatttagctagaaaagtcgcggttcttgttgaaacg
gaacaacctatgatagatttgctgcgtcagcacgatcagcttaatctcctgtacgaaatg
gagcaacctttagcacttgtacttgctaaaatggagattgctggtattaaggtagagcga
gaaacattgcaaacgatgcaggttgaaaacgagagagttctgactcagttaacacaggaa
atctatgatttagcaggggaagaattcaatatcaattcgcctaaacaattgggaggtatt
ctttttgaaaaattagggctgccaacggcttttactaaaaaaacgaaaacgggctattct
actgcggtagatgtattagaacgtttagcgccgattgcaccgattgttgaaaagattttg
gagtatcgacaaattgctaaaattcagtcaacttatgtcatggggttacaagactggatt
ttggcagacgggaagattcatactcgctatcttcaagatttgacccagacaggaaggcta
tctagcgtgtatcctaatctgcaaaatattccaattcgtttggagcaaggacgcttaatt
cggaaagcttttgtgccggagtggaaggatagtgttttacttagttctgattattcgcaa
atcgagttacgggttttggcgcatatttcaggcgacaagcatttaattgaagcattcaga
catggagctgatattcatacttcaacagctatgcgggtttttggtattgaaaagccagag
gatgtgacaccaaatgatcgccgtaatgctaaagctgtcaactttggtgttgtttatggg
atttctgattttggacttgccaacaatctggggattagccgtaaagaagctaaatcttat
attgatacttattttgaacgctatcctggaattaagaattatatggaaaatgtggtacga
gaggctcgagatcaaggttatgtagaaactctcttccaccgtcgtcgggagatcccagat
attaattctcgtaactttaatgttcgaggatttgcagaaagaacggctatcaattcacca
attcaagggtcagctgcagatattcttaagattgctatgattcggttagatcaagctctg
cgtgctgggcgatttaaaagtagaatgttgttacaagtccacgacgaaattgtacttgaa
gtacccgcaaatgaattgactgctatcaaaacgctggttaaagagattatggaatctgct
attgaactctctgttccgttgaaagcggacgaaagtgcaggtgagacttggtatgaagcc
aagtaa
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integrated database retrieval system
