Streptococcus infantarius subsp. infantarius: Sinf_0008
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Entry
Sinf_0008 CDS
T01765
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sif
Streptococcus infantarius subsp. infantarius
Pathway
sif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sinf_0008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sif03400
]
Sinf_0008 (mfd)
Enzymes [BR:
sif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sinf_0008 (mfd)
DNA repair and recombination proteins [BR:
sif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sinf_0008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
adh_short
DUF3545
Motif
Other DBs
NCBI-ProteinID:
AEZ61388
LinkDB
All DBs
Position
6024..9437
Genome browser
AA seq
1137 aa
AA seq
DB search
MGLSGASRALAIASAYQANEEKVVIITSTQNEVEKLASDLSSLIGEDKVYTFFADDVAAA
EFIFASMDKAHSRLEALNFLQDKKQSGILITSLVGTRVLLPNPKTYSESQLNFIVGEDYN
LDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIYEITADYPYRLEFFGDEVDGIRQFDA
QTQKSLSNVEQVTIYPADELILSEEDFARASQAFERYLETAKDDKQAYLSELYAATQEQY
RHQDIRRFLSLFYAKEWTLLDYIPKGTPVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGK
AMSSLVYFADIYKELRQYQPATFFSNFHKGLGNLKFDKLHNFTQYPMQEFFNQFPLLIDE
INRYQKSRATILVQSDTQHGLERLQENLQGYGLDLPIVGANDLQEHQAQLVVGNLSNGFY
FADDKIVLITEHEIYHKKVKRRIRRSNISNAERLKDYNELSKGDYVVHHVHGIGQFLGIE
TIEIHGVHRDYLIIQYQGSSTISLPVEQIESLSKYVSADGKEPKINKLNDGRFQKTKQKV
SKQVEDIADDLLKLYAERSQLKGFAFSPDDDLQKEFDDDFAYVETEDQLRSIKEIKHDME
EEKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVLAQQHFTNFSERFENYP
VAVDVLSRFQSKKEQTATLEKLKKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVK
HKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGL
IREAIIREIDRGGQVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDF
IEGVYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYR
PDKILTEVSEKRLDAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSVGFEMYSQ
LLEEAIAKKQGKSQARRKSNAEINLQIDAYLPSEYIDDERQKIEIYKRIREIESLKDYQS
LQDELIDRFGEYPDQVAYLLEIGLVKSYMDSAFTELVERKDNNLLVRFEKASLQHYLTQD
YFEALSKTDLKARIGENQGRIEITFNVRGKKDYEILEELQKFGSMLAEIKARKAKED
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgtcaggagcaagtagagctcttgctatagcttcagcttatcaagctaatgaa
gaaaaagtagtgattatcacctcaactcaaaatgaagttgaaaaattggctagtgattta
tctagtttgattggtgaagataaggtttatacgttttttgcggatgatgttgctgctgca
gaattcatttttgcttcgatggataaagctcattctcgcttagaagctttgaatttttta
caagataaaaaacaatcaggtatcttgattacgagtctagttggtactcgtgttttgttg
ccaaatcctaaaacttactcagaaagtcaattgaattttattgtcggagaggattacaac
cttgacaaggttgtaaaggtcttgtcaaacgttggttaccaaaaagtttctcaggttttg
aatcctggcgagtttagccgacgtggtgatattgtcgatatctatgagattacagcagat
tatccgtaccgcttggaattctttggtgatgaagttgatggtattcgtcaatttgatgca
cagactcaaaaatctcttagtaatgttgaacaagtaacgatttatccagcagatgagttg
attttgtcagaagaggactttgctagagctagtcaagcttttgagagatatcttgaaact
gcaaaggatgacaaacaagcttatttgagtgaactttacgcagctacacaagagcagtat
agacatcaagacattagacgttttttgtctctcttttatgctaaagagtggacacttctc
gattatattccaaaagggacaccagtcttctttgatgattttcaaaagttggttgaccgc
aatgctaagtttgatttagaggttgctaatctattgacagaagatttacagcgtggtaaa
gctatgtcaagtttggtttactttgctgatatttataaggagttacgtcaataccaacca
gcaaccttcttttcaaacttccataaaggattgggaaatctgaaatttgataaattacac
aatttcacccaatacccgatgcaagaattcttcaatcaatttccacttttgattgatgag
attaaccgttatcaaaaatcaagagccactattttagttcaatcagacacgcagcatggt
ttagaacgtctgcaagagaacctgcaaggatatggtttggatttgccgatagttggtgca
aatgatttacaagaacatcaagctcaattagtagtcggtaatttatcaaatggtttttac
tttgctgacgacaaaattgttttaatcactgagcacgaaatttatcataaaaaagtcaaa
cgtcgtattcgtcgatcaaatatcagtaatgcagaacgtttgaaagattacaatgagctt
tctaagggtgattatgtggttcaccatgttcacggaattggtcaatttttagggattgaa
actattgaaattcatggggtacaccgtgactatttgatcattcaataccaaggttcttca
acgatctctcttcctgtagaacaaattgaaagtctatcaaaatatgtttctgcagatggt
aaagaaccaaaaatcaataaattaaacgatggacgtttccaaaaaacgaaacaaaaagtt
tctaaacaagttgaagatattgctgatgatttgttgaaactatatgcggaacgcagtcaa
ttgaaaggttttgccttctcaccagatgatgatttacaaaaagagtttgatgacgacttt
gcttacgtagagacagaagaccaacttcgttccattaaagaaatcaaacacgatatggaa
gaagaaaaaccaatggaccgacttttggttggtgatgttggttttggtaaaacagaggtt
gccatgcgtgccgcctttaaggctgttaaagaccacaaacaagtagccgttctagtgccg
actactgtgcttgctcagcaacactttacaaatttctcagagcgttttgagaattatcct
gtagcggttgatgtacttagccgttttcaaagtaaaaaagagcagacagccactttggaa
aaattgaaaaaaggtcaagttgatattattatcggaactcaccgattgttatcaaaagat
gtagagtttgcagatttgggcttgattattatcgatgaagagcaacgttttggcgttaaa
cacaaggaaaaattaaaagagcttaagactaaagttgatgttttaaccttaacagcaact
ccaattcctcgtacacttcacatgtctatgcttggtatccgtgatttatctgtgattgaa
acaccaccgacaaatcgttaccctgttcagacttatgtcttggaaactaatcctggattg
attcgcgaagccattattcgtgaaattgatcgtggtggtcaagttttctacgtttacaat
cgcgttgacacgattgatcaaaaggtttctgagttacaagaattggtgcctgaagcaagt
attggatttgttcatggtcaaatgagtgaaattcagcttgaaaacaccttgatggacttt
attgaaggtgtttacgatgttctcgttgccacaacgattattgagacaggtgttgatatt
tctaacgtcaataccttgttcattgaaaatgctgaccacatgggcttgtcaaccttgtat
caacttcgtggtcgtgttggtcgttctaatcgtattgcctatgcttatctcatgtatcgc
ccagataagattttgaccgaagtctctgaaaaacgcttagatgccatcaaaggatttaca
gagcttggttctgggttcaaaattgccatgcgtgacttatctattcgtggtgcaggaaat
atcttaggtgcttcacagagcggttttattgattctgtcggttttgagatgtattctcaa
ttattagaagaagcgattgctaagaaacaaggtaaatctcaggcacgtcgtaagagtaat
gctgagattaatctacaaattgatgcttatctaccaagtgagtacattgatgacgagcgt
caaaaaattgagatttacaaacgtattcgtgaaattgagagtcttaaagattaccaaagt
ttacaagatgaattgattgaccgttttggagaatacccagatcaggtcgcttatcttctt
gaaattggtttggtgaaatcatacatggacagtgcttttacagaacttgttgaacgtaaa
gataataatcttttggtgcgttttgaaaaagcttcgctacaacattatttgactcaagat
tattttgaggctctttctaagacagatttgaaagctcgaatcggtgagaaccaaggtaga
attgaaattacatttaatgttagaggtaaaaaggactatgaaattttagaagaactccaa
aaatttggtagcatgctagctgagattaaagctagaaaagctaaagaagactaa
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