Streptococcus infantarius subsp. infantarius: Sinf_0095
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Entry
Sinf_0095 CDS
T01765
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sif
Streptococcus infantarius subsp. infantarius
Pathway
sif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sinf_0095 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sif03021
]
Sinf_0095 (rpoC)
03400 DNA repair and recombination proteins [BR:
sif03400
]
Sinf_0095 (rpoC)
Enzymes [BR:
sif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sinf_0095 (rpoC)
Transcription machinery [BR:
sif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sinf_0095 (rpoC)
DNA repair and recombination proteins [BR:
sif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sinf_0095 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEZ61473
LinkDB
All DBs
Position
98868..102506
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLTSPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKIQEYGQGSFVAKMGAEAIQDLL
KRVDLKSEIAELKEELKTATGQKRIKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEPGREGEGMVFKDRDEAVMAYRNGYVHLHTRVGI
TVDSMPNKPWTDEQKHKIMVTTVGKILFNDIMPDDLPYLQEPNNANLTEKTPDKYFLAPG
QDIHTVIDSLDINVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHTKVEQINKAFRRGLMTDDDRYVAVTTTWREAKEELEQRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEVTETL
EERLVGRYTKKSVKHPETGEVIVGADVLITEDMAAEIVKAGVEEVTIRSVFTCNTRHGVC
RHCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVVDIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVAVGDE
VHRGAPLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRIMDPGDTDLLPGTLMDIADFTDANKDVVISGGIPATARPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNELETSEEA
ETVEASAPTDAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattaacctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactatcgtacgctcaaa
ccagaacgtgaaggtctttttgatgaagttatcttcggacctacaaaagactgggaatgt
gcttgtggtaaatataaacgtattcgttataaaggaattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaagttcgtcgtgaacgtatgggtcacatcgaattgaaagctcca
gtatcacacatttggtacttcaaaggtattccatcacgtatgggacttactttggacatg
agcccacgtgcacttgaagaagttatctacttcgctgcttacgtggttatcgatccaaaa
gatactccgcttgaaccaaaatcacttttgacagaacgcgaataccgtgaaaaaatccaa
gaatatggacaaggttcattcgtagcgaaaatgggtgcggaagctatccaagatcttctt
aaacgcgttgatttgaaatctgaaatcgctgaacttaaagaagaattgaaaacagcaact
ggccaaaaacgtatcaaagctgttcgtcgtttggatgttcttgatgccttctacaagtct
ggtaacaaaccagaatggatggtacttaacatcttgccagttattccaccagatcttcgt
ccaatggttcaattggatggtggacgttttgctgcatctgacttaaacgacctttaccgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgcccctggtatc
atcgtgcaaaacgaaaaacgtatgttgcaagaagctgttgatgcacttatcgataacggt
cgtcgtggtcgtccaattacaggtcctggtagccgtcctcttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
ggacgttcagttatcgccgtaggtccaacacttaaaatgtatcaatgtggtgtgccacgt
gaaatggctatcgaattgttcaaaccatttgtaatgcgtgaaatcgttgctcgtgattac
gctggtaacgttaaagcagctaaacgtatggttgaacgtggagatgaacgtatttgggat
attcttgaagatgttattaaagaacacccagtacttcttaaccgcgcaccgactcttcac
cgtttggggatccaagcctttgaaccagtccttatcgatggtaaagcacttcgtcttcac
ccacttgtttgtgaagcctataatgccgacttcgatggtgaccaaatggccatccacgta
ccactttctgaagaagctcaagcagaagcacgtcttcttatgcttgccgcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaactccatctcaagatatggttcttggtaac
tactacctaactatggaagaaccaggtcgtgaaggtgaaggaatggtcttcaaagaccgt
gatgaagcagttatggcataccgcaatggttatgttcacttgcacacacgtgttggtatt
acagttgatagcatgccaaacaaaccatggactgatgaacaaaaacacaaaatcatggtt
acaactgttggtaagatcctctttaatgacatcatgcctgatgatctaccttaccttcaa
gaaccaaacaatgctaacttgactgaaaaaactccagataaatacttcttggcacctggt
caagatatccacactgttatcgacagcttggacatcaacgttccattcaagaagaaaaat
cttggtaacattatcgcggaaatctttaaacgtttccgtacaacagaaacatcagccttc
cttgaccgcttgaaagaccttggttactaccattcaactcttgctggtttgacagtgggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgcagcccacacgaaa
gttgaacaaattaacaaagccttccgtcgtggtttgatgactgatgatgatcgttatgtt
gctgttacaacaacatggcgtgaagctaaagaagaacttgaacaacgtctgattgaaaca
caagatcctaagaaccctatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacaacttgccggtatgcgtggtttgatggctgctccgaacggacgtatcatg
gaattgcctatcttgtctaacttccgtgaaggtttgtctgtcttggaaatgttcttctca
actcacggtgctcgtaaaggtatgaccgatacagcccttaagactgccgactctggttac
cttactcgtcgtttggttgacgttgcccaagacgttatcattcgtgaagacgattgtgga
actgaccgtggtcttgtcatccgtgctatcactgatggtaaagaagttacagaaactctt
gaagaacgtcttgttggtcgttatactaagaaatctgttaaacaccctgaaactggtgaa
gttatcgttggtgctgatgtattgattactgaagatatggcagctgaaattgttaaagct
ggtgttgaagaagtaacaatccgttcagtatttacatgtaacactcgtcatggtgtatgt
cgtcactgttatggtgtcaaccttgctacaggtgatgcggttgaagttggtgaagcagtt
ggtacaattgccgctcaatctatcggtgaacctggtactcagcttacaatgcgtaccttc
cacacgggtggtgttgcgtcaaataccgatatcacacaaggtcttcctcgtatccaagaa
atctttgaagctcgtaaccctaaaggggaagcagttatcactgaagttaaaggtactgtt
gttgacatcgaagaagatgcttctacacgtactaagaaagtttacgttcaaggtaagact
ggtatgggtgaatacgtggtaccattcacagctcgtatgaaagtagctgttggtgacgaa
gttcaccgtggtgcaccactcactgaaggttctatccaacctaaacgtctccttgaagtt
cgtgatacattatcagttgaaacttaccttcttgccgaagtacaaaaagtataccgtagc
caaggggtagaaatcggtgataaacacgtcgaagtaatggttcgtcaaatgcttcgtaaa
gttcgtatcatggatccaggtgatacagatcttcttccaggtacacttatggatatcgca
gacttcacagatgctaacaaggatgttgttatctctggtggtattcctgcaactgcacgt
ccagtacttatgggtattactaaagcttcgcttgaaactaactcattcttgtcagctgca
tcattccaagaaacaactcgtgttcttacagatgctgctatccgtggtaaaaaagatcac
cttcttggtcttaaagaaaatgttatcatcggtaaaatcattccagctggtacaggtatg
gcacgttaccgtaaccttgaaccacaagctgttaatgaacttgaaacaagtgaagaagct
gaaacagttgaagcatctgcaccaacagatgctgaataa
DBGET
integrated database retrieval system
