Saccharolobus islandicus HVE10/4: SiH_1351
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Entry
SiH_1351 CDS
T01952
Name
(GenBank) KH type 1 domain protein
KO
K03679
exosome complex component RRP4
Organism
sih
Saccharolobus islandicus HVE10/4
Pathway
sih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SiH_1351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sih03019
]
SiH_1351
Messenger RNA biogenesis [BR:
sih03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SiH_1351
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SiH_1351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
RRP40_S1
S1
KH_1
PIMT_C
Motif
Other DBs
NCBI-ProteinID:
ADX82700
UniProt:
F0NKG3
LinkDB
All DBs
Position
1342408..1343151
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AA seq
247 aa
AA seq
DB search
MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNL
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacagccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactctacagttgttggactttttgatgtaaaagatactcagtttgaagtgattccg
ttggaaggttcgttttactatcctaaggtcaatgatgtggtaataggtttagtggaggac
gttgaaatctatggttgggtggttgacataaaatcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactatgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtgaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgtatgagactttgacctcaaaaagt
ggatgcagtatgtttgttgccaataatggtagaatatgggctacttgtccttcccgcttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatctttga
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