Saccharolobus islandicus HVE10/4: SiH_1352
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Entry
SiH_1352 CDS
T01952
Name
(GenBank) exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
sih
Saccharolobus islandicus HVE10/4
Pathway
sih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SiH_1352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sih03019
]
SiH_1352
Messenger RNA biogenesis [BR:
sih03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SiH_1352
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SiH_1352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ADX82701
UniProt:
F0NKG4
LinkDB
All DBs
Position
1343117..1343854
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AA seq
245 aa
AA seq
DB search
MLQVERPKLIFEDGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE
MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT
AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM
WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVEF
KEEGV
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagtggagagaccaaaactaatctttgaagatggaaagcgaatagatggtaga
aagccagaggaattaaggagtataaagatagaattgggagttctcaaaaacgctgatggt
tcagcgatttttgagatgggaaatacaaaggctatagcagcggtttacggtccaaaagaa
atgcatccaagacacttatctcttccggatagggcagtattaagagttagatatcatatg
acaccattctctacagacgagcgaaagaatcccgcacctagtagaagagagattgagctt
tctaaggttataagagaagctttagaatcagctgttttagtggaattgtttccaagaact
gccatagatgtttttactgaaatattacaagcagacgcgggatccagattagtttcattg
atggctgcgtctttggcgttagctgatgctggaattcctatgagagatttaatagctggg
gtagctgtagggaaggctgatggagtaatagttctagatttaaatgaacccgaggatatg
tggggagaggctgatatgccggttgcaatgatgccttctttaaaccaggtgacgttattt
cagttaaatggtaatatgactccggaggaatttaggcaagcttttgatttagcagttaag
ggtataaatataatatataatttagagagggaggctctaaaaagtaagtatgtagagttt
aaagaagagggtgtatag
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