Saccharolobus islandicus HVE10/4: SiH_1661
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Entry
SiH_1661 CDS
T01952
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sih
Saccharolobus islandicus HVE10/4
Pathway
sih04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SiH_1661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sih03019
]
SiH_1661
03009 Ribosome biogenesis [BR:
sih03009
]
SiH_1661
04131 Membrane trafficking [BR:
sih04131
]
SiH_1661
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sih04147
]
SiH_1661
Messenger RNA biogenesis [BR:
sih03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SiH_1661
Ribosome biogenesis [BR:
sih03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SiH_1661
Membrane trafficking [BR:
sih04131
]
SNARE
SNARE associated proteins
Others
SiH_1661
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SiH_1661
Exosome [BR:
sih04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SiH_1661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
TIP49
AAA_14
AAA_33
nSTAND3
Vps4_C
AAA_28
AAA_18
IstB_IS21
RNA_helicase
Mg_chelatase
AAA_lid_PRS2_C
AAA_25
ABC_tran
NACHT
AAA_24
ATPase_2
DUF815
TsaE
NPHP3_N
AAA_3
AAA_17
AAA_7
Parvo_NS1
Molydop_binding
Zeta_toxin
AAA_11
ATP-synt_ab
PhoH
ATPase
NB-ARC
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
ADX83009
UniProt:
F0NPV1
LinkDB
All DBs
Position
1611862..1614141
Genome browser
AA seq
759 aa
AA seq
DB search
MRKTYFKRFGKMINMSQQLKLRVVEARQRDVGRKVARITDYTMSRLGIENGDYVEITGPS
GSSLAQALIGDGIADNEIRIDGYIRKSIGVGIGDEVTVKKAQVQDASKVVLAPTQPISFS
QSFVEYVKDWLMDKPLSRGETISVPTYVGSIDFVVVSTQPSQSVRVTGRTSLEIRQEPVK
ETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLLYGPPGVGKTL
LARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFIDEIDAIAPKR
EEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDAVDPALRRPGRFDREIEIRPPD
AKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREAAMNALRRFINERKIN
LEQEQIPVDVLKELKVTMQDFIDAMKFIQPTLLREVYVEVPKVKWEDIGGLEEAKQQLRE
AVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKW
VGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLSEMDGIQS
LNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE
ELAKKLEGYTGADIEALARETTMKVLRQKYYECSNKAKKECKDQECSDKTIKNCMSNLEI
KITMQDFLDTMKIVTPSLTKADIMRYENMVKEIKRSVIG
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagacttattttaaacgtttcggaaagatgattaatatgtcccaacaattaaaa
ttgagagtggtagaagctaggcaaagagatgttggtaggaaggtcgccagaataactgat
tacactatgagtaggttaggaatagagaacggtgattatgtagagattactgggccttca
ggatcttcattggcacaagcgttaataggagatggaatagcggacaatgagataagaata
gatggttacattagaaaatccataggagtgggtattggagatgaagttacagtaaagaaa
gcacaagtgcaagatgctagcaaggtagttttggctccaacacaacctatttcctttagc
caaagttttgtagagtatgtcaaagactggttaatggataaacctctaagcagaggagaa
acaatttctgttcctacttacgttggatccatagacttcgttgtagtttcaacacagcct
tcacaatctgtaagggttacaggtagaacttccttagagataagacaagaaccggtaaag
gaaactgcagcagtacctaaggtcacttgggaagatattggcgaccttgaagacgtaaag
gaaaaaataagagaaatagtagaacttccaatgagacatccagaagttttccagcatcta
ggaatagaaccacctaagggtgtattactatatggaccaccaggagttggaaaaacctta
ttggctagggcacttgctaatgaaataggtgcgtacttcacttcaatcaatggaccagaa
ataatgagcaaattctacggtgaaagtgaacagagactaagggaaatctttgaggaggct
gaaaagaacgcgccagctataattttcattgatgaaatagatgcgatagcaccaaagagg
gaagaagttaccggagaagtagagaaaagagtggtagcgcaattgttgactctaatggat
ggaattaaaggaagaggaaaagtaatagtcataggagcaactaatagaccagatgctgta
gatccggcattaagaagaccaggtagatttgatagggaaatagagattaggccgcctgac
gctaaggctagaaaagagattctacaagtacatactagaaatatgcctctagctgaggat
gtggatttagataaaatctccgaacagactcacggctacactggagctgatctagcagct
ctagctagagaagcagcaatgaatgccttaagaaggtttattaatgaacgcaaaattaat
ctagaacaagaacaaataccagtcgatgtcttaaaggaattgaaagtaaccatgcaagat
ttcattgacgccatgaagttcatccaaccaacactccttagagaagtatatgtggaagtg
ccaaaagttaaatgggaggatattggaggattggaagaagctaaacagcaattaagagaa
gctgttgagtggccattaaaattcccagaaatgttcgaaaagcttggtattagaccacct
aagggtatattgttatttggtccaccaggaactggaaagacgatgcttgcaaaggctgtt
gcaactgaaagcggagcaaacttcatagcagtaagaggaccagaaatattatccaaatgg
gtaggtgaaagtgaaaaagcagttagggaaatatttaggagggcaaggcaaacggctcct
tgtgtaatattctttgatgaaatagattcgattgctcccatgagaggctttacacacgat
tccggtgtaacagaaagaatagtaaatcagttactatcagaaatggatggaatccaatcg
ctaaatagagttgtagttatagctgcaactaatagaccagatattctagatccagctctg
ttaagaccgggtcgatttgatagattaatatatgtccccccacctgacgaaaaggctaga
atagagatactcaaaatttacactaaaacactacccatagattccagtgtgaacctagag
gagttggccaaaaaacttgagggatatactggagctgatatagaggctttagctagggaa
accacaatgaaagtattaagacaaaagtattatgagtgttcaaataaagctaaaaaggag
tgtaaagaccaagagtgtagtgataagaccataaagaattgtatgagcaatctggaaata
aaaatcactatgcaagacttcctagataccatgaagattgtaacgcctagtctgactaaa
gctgatattatgagatatgaaaacatggtaaaggaaataaagagatcggtgattggttga
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