Saccharolobus islandicus HVE10/4: SiH_1784
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Entry
SiH_1784 CDS
T01952
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
sih
Saccharolobus islandicus HVE10/4
Pathway
sih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SiH_1784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sih03019
]
SiH_1784
Messenger RNA biogenesis [BR:
sih03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SiH_1784
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SiH_1784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
Zn_ribbon_Com
OB_RRP5_4th
DUF5817
FtrD-like
Cas12f1-like_TNB
HypA
C1_1
Motif
Other DBs
NCBI-ProteinID:
ADX83132
UniProt:
F0NRI1
LinkDB
All DBs
Position
1726121..1726690
Genome browser
AA seq
189 aa
AA seq
DB search
MRVQGELTLPGEELAVIEEFIAGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIL
QHLKKAKYVIGIVNSIKEDSALVSIVGIEEKSLASSISAYLHISQISNKKLNSITDAIKI
GDVIKAKLLSYTFPLALTIKMKDLGVVYARCSRCGYLLIKQDENNLKCQRCGNIEQRKIG
SYMVKKGGN
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgagagttcaaggtgaattaaccttacccggagaagagctagcagtgattgaagaattt
atagctggcgatggtacgtatgaacaaaatggtatagttagagctgcggttgtaggaaaa
atcttttatgatatgctaaatagaaaaagtaacgtactgggatttaagaaaatcatactt
caacacttaaagaaggctaaatacgtgatcggtattgtaaattctattaaagaagattca
gcactagtttcaatagtaggtatcgaggagaaaagtcttgcgtcatcaatttcggcttac
ttacatatctctcaaataagtaataaaaaacttaatagtataacagatgctataaaaatc
ggagatgtaattaaagctaaattactttcatacacttttcctttagctttaactattaag
atgaaagatcttggagttgtttatgctagatgctcaagatgtggatacttattgatcaag
caagacgaaaataatttaaaatgtcagagatgcggaaatattgaacaacgaaaaatagga
tcttatatggtgaagaaaggtggaaattaa
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integrated database retrieval system
