KEGG   Saccharolobus islandicus HVE10/4: SiH_1890
Entry
SiH_1890          CDS       T01952                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sih  Saccharolobus islandicus HVE10/4
Pathway
sih03030  DNA replication
sih03410  Base excision repair
sih03420  Nucleotide excision repair
sih03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sih00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SiH_1890
   03410 Base excision repair
    SiH_1890
   03420 Nucleotide excision repair
    SiH_1890
   03430 Mismatch repair
    SiH_1890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sih03032]
    SiH_1890
   03400 DNA repair and recombination proteins [BR:sih03400]
    SiH_1890
Enzymes [BR:sih01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SiH_1890
    6.5.1.6  DNA ligase (ATP or NAD+)
     SiH_1890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SiH_1890
DNA replication proteins [BR:sih03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SiH_1890
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SiH_1890
DNA repair and recombination proteins [BR:sih03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SiH_1890
   NER (nucleotide excision repair)
    Other NER factors
     SiH_1890
   MMR (mismatch excision repair)
    Other MMR factors
     SiH_1890
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ADX83237
UniProt: F0NQ34
LinkDB
Position
1817968..1819773
AA seq 601 aa
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLK
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAER
LSNPEEILKKVGGSALVDYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYT
EGKEFIIEGEIVAVDPESGEMRSFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEVRRKLLESIVKPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFE
SVCKVASGFSDEQLDELQKKLMEIKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISP
LHTCCQGVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPPIDES
V
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggagtttaaagttattgccgaatactttgataaattagagaagatatcttcaaggctc
cagcttacagctttactggctgatcttttaagcaaaagtgataaggcaattatagataag
gtagtttatattatacaaggcaaattatggcctgattttctaggttatccagagcttgga
attggagagaaattcttaataaaagcaattagtatagctacgaacacagatgaaaattca
gtagaaaatctctataagtcaataggtgatcttggagaagtagctcgaaggttgaaaagt
aagcagcaaagtacaggaattttaggttttttgggtacatcaagtaaagagagcttaaaa
gtggatgaagtttactctacgttatctaaggtggcattaactacgggagagggtagtaga
gatttaaagataagattactggcaggattgttaaaaaaggcagatccgttagaggccaag
ttcctagttaggtttgttgaaggtcgacttagagttggtataggagatgcgacagtttta
gatgctatggcaatagcttttggcggggggcaatcagcatcagaaatagttgaaagagct
tataatcttagggcggatctaggaaacattgcaaaaattatagtagagaagggaattgaa
gccttaaagactctaaaacctgaagttggaataccaattagaccgatgctagctgaaagg
ttatcaaatcctgaagaaatattaaagaaagtaggtggaagtgcattagtcgattataaa
tacgatggagagagggcccaaatacacaaaaaagatgacaaaatttttatattttctcga
agattagagaacattacttctcagtatccagatgtagtagagtatattagtaaatacact
gaaggcaaagagttcattatagaaggagaaatagtggctgtagatccagaaagcggtgag
atgagatcatttcaagaattaatgcacagaaagaggaagtcagatatttacgaagcaatt
aaagagtacccagtaaacgtatttctctttgatttaatgtattatgaagatgtagattat
actacaaagccattagaagttaggagaaaattgttagaaagtattgtaaaaccaaacgac
tatgtaaaaatagctcatcatattcaagttaataatgtagaggatcttaaatcgttcttc
tatcgagcaatatctgagggtggagagggagtaatggtgaaggcaattggaaaagatgca
atatatcaagccggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagtagacttagtagttgttggtggtttctatgggaagggtaaaaga
ggcggcaagataagctcactattaatggccgcatataatcctaagactgatactttcgaa
tctgtttgcaaggtggctagtggcttctcagatgagcaacttgatgagttacagaagaag
ttaatggaaataaagagggatataaaacatcctagagttaattctaagatggaaccagat
atatgggtagagccagtttatgtagcggaaataattggagcggagataacaatatctcct
ttacatacttgttgtcaaggcgtcgtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagagatgataaaagtccagaagatgctacaactactgatgagata
cttgaaatgtacaacaagcagcctaagaagaagatcgaatcaccacctatagacgagagc
gtttaa

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