Saccharolobus islandicus L.D.8.5: LD85_1610
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Entry
LD85_1610 CDS
T01158
Name
(GenBank) KH, type 1, domain protein
KO
K03679
exosome complex component RRP4
Organism
sii
Saccharolobus islandicus L.D.8.5
Pathway
sii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LD85_1610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sii03019
]
LD85_1610
Messenger RNA biogenesis [BR:
sii03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
LD85_1610
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
LD85_1610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
RRP40_S1
S1
KH_1
PIMT_C
Motif
Other DBs
NCBI-ProteinID:
ADB87276
UniProt:
D2PC56
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All DBs
Position
1409969..1410712
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AA seq
247 aa
AA seq
DB search
MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacagccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactccacagttgttggactttttgatgtaaaagatactcagtttgaagtgattccg
ttggaaggttcgttttactatcctaaggtcaatgatgtggtaataggtttagtggaggac
gttgaaatctatggttgggtggttgacataaaatcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactatgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtgaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgtatgagactttgacctcaaaaagt
ggatgcagtatgtttgttgccaataatggtagaatatgggctacttgtccttcccgcttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga
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