Saccharolobus islandicus L.D.8.5: LD85_1943
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Entry
LD85_1943 CDS
T01158
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sii
Saccharolobus islandicus L.D.8.5
Pathway
sii04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LD85_1943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sii03019
]
LD85_1943
03009 Ribosome biogenesis [BR:
sii03009
]
LD85_1943
04131 Membrane trafficking [BR:
sii04131
]
LD85_1943
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sii04147
]
LD85_1943
Messenger RNA biogenesis [BR:
sii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LD85_1943
Ribosome biogenesis [BR:
sii03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LD85_1943
Membrane trafficking [BR:
sii04131
]
SNARE
SNARE associated proteins
Others
LD85_1943
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LD85_1943
Exosome [BR:
sii04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LD85_1943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
TIP49
AAA_14
AAA_33
Vps4_C
nSTAND3
AAA_28
AAA_18
IstB_IS21
RNA_helicase
Mg_chelatase
AAA_lid_PRS2_C
AAA_25
ABC_tran
NACHT
AAA_24
ATPase_2
DUF815
TsaE
AAA_3
NPHP3_N
AAA_17
AAA_7
Parvo_NS1
Molydop_binding
Zeta_toxin
AAA_11
ATP-synt_ab
PhoH
NB-ARC
ATPase
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
ADB87599
UniProt:
D2PD29
LinkDB
All DBs
Position
1680831..1683110
Genome browser
AA seq
759 aa
AA seq
DB search
MRKTYFKRFGKMINMSQQLKLRVVEARQRDVGRKVARITDYTMSRLGIENGDYVEITGPS
GSSLAQALIGDGIADSEIRIDGYIRKSIGVGIGDEVTVKKAQVQDASKVVLAPTQPISFS
QSFVEYVKDWLMDKPLSRGETISVPTYVGSIDFVVVSTQPSQSVRVTGRTSLEIRQEPVK
ETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLLYGPPGVGKTL
LARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFIDEIDAIAPKR
EEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDAVDPALRRPGRFDREIEIRPPD
AKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREAAMNALRRFINERKIN
LEQEQIPVDVLKELKVTMQDFIDAMKFIQPTLLREVYVEVPKVKWEDIGGLEEAKQQLRE
AVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKW
VGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLSEMDGIQS
LNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE
ELAKKLEGYTGADIEALARETTMKVLRQKYYECLNKAKKECKDQECSDKTIKNCMSNLEI
KITMQDFLDTMKVVTPSLTKADIMRYENMVKEIKRSVIG
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagacttattttaaacgtttcggaaagatgattaatatgtcccaacaattaaaa
ttgagagtggtagaagctaggcaaagagatgttggtaggaaggtcgccagaataactgat
tacactatgagtaggttaggaatagagaacggtgattatgtagagattactgggccttca
ggatcttcattggcacaagcgttaataggagatggaatagcggacagtgagataagaata
gatggttacattagaaaatccataggagtgggtattggagatgaagttacggtaaagaaa
gcacaagtgcaagatgctagcaaggtagttttagctccaacacaacctatttcctttagc
caaagttttgtagaatatgttaaagactggttaatggataaacctctaagcagaggagaa
acaatttctgttcctacttacgttggatccatagacttcgttgtagtttcaacacagcct
tcacaatctgtaagagttacaggtagaacttccttagagataagacaagaaccagtaaag
gaaactgcagcagtacctaaggtgacttgggaagatattggcgaccttgaagacgtaaag
gagaaaataagagaaatagtagaacttccaatgagacatccggaagttttccagcatcta
ggaatagaaccacctaagggtgtattactatatggaccaccaggagttggaaaaacctta
ttggctagggcacttgctaatgaaataggtgcgtacttcacttcaatcaatggaccagaa
ataatgagtaaattctacggtgaaagtgaacagagactaagggaaatctttgaggaggca
gaaaagaacgcgccagctataattttcatcgatgaaatagatgcgatagcaccaaagagg
gaagaagttaccggagaagtagagaaaagagtggtagcgcaattgttgactctaatggat
ggaattaaaggaagaggaaaagtaatagtcataggagcaactaatagaccagatgctgta
gatccggcattaagaagaccaggtagatttgatagggaaatagagattagaccgcctgac
gctaaggctagaaaagagattctacaagtacatactagaaatatgcctctagctgaggat
gtggatttagataaaatctccgaacagactcacggctatactggagctgatctagcagct
ctagctagagaagcagcaatgaatgccttaagaaggtttattaatgaacgcaaaattaat
ctagaacaagaacaaataccagtcgatgtcttaaaggaattgaaagtaactatgcaagat
ttcattgacgccatgaagttcatccaaccaacactccttagagaagtatatgtggaagtg
ccaaaagttaaatgggaggatattggaggattggaagaagctaaacagcaattaagagaa
gctgttgagtggccattaaaattcccagaaatgttcgaaaagcttggtattagaccacct
aagggtatattattatttggtccaccaggaactggaaagacgatgcttgcaaaggctgtt
gcaactgaaagcggagcaaacttcatagcagtgagaggaccagaaatattatccaaatgg
gtgggtgaaagtgaaaaagcagttagggaaatatttaggagggcaaggcaaacggctcct
tgtgtaatattctttgatgaaatagattcgattgcgcccatgagaggctttacacatgat
tccggtgtaacagaaagaatagtaaatcagttactatcagaaatggatggaatccaatcg
ctaaatagagttgtagttatagctgcaactaatagaccagatattctagatccagctctg
ttaagaccaggtcgatttgatagattaatatatgtccccccacctgacgaaaaggctaga
atagagatactcaaaatttatactaaaacactacccatagattccagtgtgaacctagag
gagttggccaaaaaacttgagggatatactggagctgatatagaggctttagctagggaa
accacaatgaaagtattaagacaaaagtattatgagtgtttaaataaagccaaaaaggag
tgtaaagaccaagagtgtagtgataagaccataaagaattgtatgagcaatctggaaata
aaaatcactatgcaagatttcctagataccatgaaggttgtaacgcctagtctgactaaa
gctgatattatgagatatgaaaacatggtaaaggaaataaagagatcggtgattggttga
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