Scardovia inopinata: SCIP_0182
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Entry
SCIP_0182 CDS
T03977
Name
(GenBank) tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sij
Scardovia inopinata
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sij03016
]
SCIP_0182
Enzymes [BR:
sij01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SCIP_0182
Transfer RNA biogenesis [BR:
sij03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SCIP_0182
Prokaryotic type
SCIP_0182
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
DKCLD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
BAR06249
LinkDB
All DBs
Position
239606..240640
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AA seq
344 aa
AA seq
DB search
MPTAPLRLKNKSGILLVDKPQGVTSHDVVAAARSLLGTRHVGHAGTLDPMATGLLILGYG
KATRLLSLITRADKTYQTVIRLGQATTTDDAEGSVVSQGPVSSLTDRIIQEASSRLTGTI
DQVPSSYSAIKVRGQRAYDLARQGREVQLASRKVTISDFTIHDIRPGQTDSVPAWPVIDV
AATITCSSGTYIRALGRDLGKILGCGAHLTMLRRTRIGKFSLDQGALTASTTVRTFTRRT
GEKVCRPRVVFDPCLPDGPYFYSPAQAAALTLPWITLSADQVEAVRHGRILPLPVTGLTA
ALAAYDPAHDSSRDSSHDLRLVALLEPWQGNQAKPRTVFMEPEG
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgccaacagcgccactcaggctgaaaaataagtccggcattctcctggtcgataaaccc
cagggggtcaccagccacgatgtggttgcagcagcccggtctttgctgggcaccaggcat
gttggtcatgccggcaccctggatcctatggcaacagggcttttaatcctggggtatggg
aaggcaactcgtctgctcagccttattaccagagctgataagacctatcagacagtcatc
cgtttgggacaggcaaccactaccgatgatgcagaaggaagcgtcgtctcccagggtcct
gtttcctccttgactgatcggataatccaggaagccagctcgcgcctgaccggcaccatt
gatcaggttcccagctcctactctgccattaaggtcaggggacagagggcgtacgatctt
gcccgacaggggagggaagttcagctcgcgtcccgcaaggttaccatcagcgactttacc
atacatgacatcaggcccggtcagactgactctgttcctgcctggcctgtgattgatgtg
gctgctactatcacctgctcatcaggaacctatattcgtgccctgggccgtgatctgggg
aaaatccttggctgcggtgcccatctgactatgctgagacggaccaggattggcaaattc
agcctggatcagggggctttaacggcttccacgaccgttcgaacttttaccaggaggacg
ggggagaaagtctgtaggccaagggttgtttttgacccctgtctgccggatggtccctat
ttttacagtcctgcccaggcagctgccctgaccctgccctggattacgctgtctgctgat
caggtggaggctgtccggcatggaagaattcttcccctgcctgtgacgggcctaaccgct
gctctcgcagcctatgatccagcccatgattcgtctcgtgattcctcccatgatcttagg
ttggttgctttattggaaccctggcagggcaaccaggccaaacctaggaccgtttttatg
gaacccgaaggctaa
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