Scardovia inopinata: SCIP_0225
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Entry
SCIP_0225 CDS
T03977
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sij
Scardovia inopinata
Pathway
sij03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCIP_0225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sij03021
]
SCIP_0225
03400 DNA repair and recombination proteins [BR:
sij03400
]
SCIP_0225
Enzymes [BR:
sij01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCIP_0225
Transcription machinery [BR:
sij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCIP_0225
DNA repair and recombination proteins [BR:
sij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCIP_0225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Ac81
CTD12
DUF2959
Motif
Other DBs
NCBI-ProteinID:
BAR06292
LinkDB
All DBs
Position
276415..280236
Genome browser
AA seq
1273 aa
AA seq
DB search
MRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDISPKDLEKVIYFAAYMVTSVDEQQRQK
DLVKLQNELDTDIQTLSKRRDNELDKRAKKLEEDLDTLLESDPETDPKAKAKLRTSAERE
LKAIRQRYDDEISRLRAVWDRFVSLKPGDMEGDVDLWREMKDRYGDYFDGSMGAEAVKKR
LQDFDLQSAAQSLREDVEKGNGQRKARALKRLKVIMAFINTGKSPADMVLDVIPVIPPDL
RPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELHAPEIMLNNEKRMLQEAVDSLFDN
GRRGRAVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLP
KSMALELFKPFVIKRLVEQQYAQNMKSAKRLVDRGDSVVWDVLEEVISNHPVLLNRAPTL
HRLGIQAFEPVLVEGKAIHLPPLACAAFNADFDGDQMAVHLPLGAEAQAEARALMLGSDN
ILKPADGHAVTMPSQDMILGLYYLTTEKAGAKGQGRIFGSREEARMALDLGEIDTQATIL
LRMPADFVLPTGWEPGQVEVVDPRQGEDSLAHEERMADGTILFATTYGRLLFNETLPVDY
PYINEQVPKGKLSGIVDDIAARYPTEQVAATLDALKDLGFTRAQWAGVTIAFSDIVAPPE
HQQIVSEYEAQADKVNDQYAMGLLTEEERRQELINLWTECTDKVADAMQKNFYEDNNVNI
MVQSGARGNWMQIRQIAGMRGLVANPRGEIIPRPVKSNYRDGLSVLEYFISQHGARKGLA
DTALRTAESGYLTRRLVDVSQDVIVREEDCGTKHGLKIVVAEPDENGDLQLVKNADGGPY
SRLLAADVVDPADGKTVLYRRDQALSMDVLKDLVAHKVTSVRARSVLTCESKRGVCAKCY
GWSLATNRLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVAELFEA
RTPKGEAPITDVDGTVHIEDNDRGRTITVSADESDETYEYKVTRRVPLLVKDGQHVDAGT
ALIEGSVDPKRILEVLGPRAAQVAIVEGVHDVYRSQGVDIHDKHIEVIVHQMLRRAVITA
PGDSKYLEGELVDRQILRATNEQIAAAGGRPADGRPELMGITKASLATESWLSAASFQET
TRVLTEAAIQNKVDDLKGLKENVIIGKLIPAGTGLARYRNAQVEPDKAIRDTIYPSFGLG
DEPEEITVDDGQGLDDIDFNKIDFNQLNISDDFNPDDFLNDLGGAAEVDPSEAEKPTSDE
PEQDLPDQPDLNQ
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccgcgaacggatggggcatattgaacttgctgcccctgtaacccacatctggttc
ttcaagggagttcccagtcgtctgggttatctcctggacatttcccccaaggacttggag
aaagtcatctactttgctgcctacatggtcacttctgtcgatgagcaacagcgtcagaaa
gatctggttaagctgcagaatgagctggatactgatattcagaccttgagcaagcggcgt
gacaacgaacttgacaaacgagccaagaaactggaagaggacctggataccctcttggaa
tctgatcctgaaacagatcccaaggctaaagccaagctgcgtaccagcgcagagcgtgag
ctgaaggcaatccgtcagcgttatgacgacgagatttcccgtttgcgcgcggtctgggac
cgctttgtcagcctcaagcctggcgatatggaaggcgatgttgacctctggcgggaaatg
aaggaccgctacggcgattactttgatggcagtatgggtgccgaggctgtcaagaagcgt
ctgcaggacttcgacttgcagtcagctgctcagagcttgcgtgaagacgtggagaagggc
aatggccagcgcaaggcccgggctttgaagaggctcaaggtgatcatggcctttatcaat
acaggaaagagtcctgctgatatggttctggatgtcatccctgtcattcctccggatctg
cgtccaatggtgcagctggacggcggtcgttttgctacttccgatctgaacgatctctac
cgccgagtaatcaatcgcaacaaccgcctcaaaaggctgattgagctgcacgctcctgaa
atcatgcttaacaatgaaaagcgcatgcttcaggaagctgttgactccctcttcgacaac
ggccgccgtggccgtgcagtgaccggtgcttccaaccggccgctaaagtccctgtcagac
atgctcaagggcaagcagggccggttccgccagaatctgttgggcaagcgggtagactat
tccggccgttctgtaatcgtggttgggcccagcctgcgcatgcatcagtgcggtctgccc
aaatccatggctttggagcttttcaagccctttgttatcaagcgtttggtggaacaacag
tatgctcagaatatgaagagcgccaagcgtctggttgatcgcggggactctgtggtgtgg
gatgttttggaagaggttatctctaaccatccagttctgctcaaccgtgcacctaccctg
caccgactgggaattcaggccttcgagccggtcctggtggaaggtaaggctattcatctg
cctcctctggcctgcgccgctttcaacgcagactttgatggagatcagatggcagtccat
ctgcccctgggagctgaagctcaggctgaagcccgggccctcatgctgggttctgacaac
atcctcaagccggctgatggtcatgctgttactatgccttcccaggatatgattcttggc
ctttattatttgaccacggaaaaggccggggccaagggccagggccggattttcggttcc
cgggaagaggcacggatggctttggatttgggtgaaattgacacccaggctaccatcctt
ctgcgtatgccggccgattttgttcttcctaccggctgggagcctggccaggttgaggtt
gttgaccctcgtcagggtgaggattctctcgcccacgaggaacgtatggctgacggaacc
atcctttttgccaccacttacggacgtcttctctttaacgagaccctgcctgtagattac
ccttatatcaatgagcaggttcccaagggcaagctgtcgggcattgtcgatgatatagct
gcccgctatcctactgaacaggttgctgcaaccctggacgctctcaaggatctgggcttc
acccgggctcaatgggctggcgtaaccattgctttctctgatattgttgctcctcctgag
catcagcagatagtcagtgaatacgaagctcaggcagacaaggtcaacgatcagtatgct
atgggtctgctgacagaagaggaacgccgtcaggagctgatcaacctctggaccgaatgc
accgataaggttgctgacgccatgcagaagaatttctacgaggacaacaacgtgaacatt
atggttcagtctggtgcccgcggaaactggatgcagatccgtcagattgccggtatgcgt
ggcctggtggctaaccctcgaggcgagattattcctcgtcctgtcaagtccaactatcgg
gatggtctgtcggtgctggaatacttcatttctcagcacggtgcccgcaagggtctggca
gatacagcattgcgtacagcagagtctggttacctgacccgtcgtctggtggatgtatcc
caggatgtgattgttcgtgaagaagattgcggcacgaagcacggcctgaaaattgtggtt
gctgagcctgacgagaatggagacctgcagctggtcaaaaatgctgacggcggcccttac
tcccgtttgcttgctgccgatgtagtagatccggctgatggtaagactgtcctctaccgt
cgcgatcaagccctgtctatggacgtgctcaaagatctggtagctcacaaagttacatca
gtcagggcccggtctgtactgacctgcgaatccaagaggggggtgtgcgctaagtgctac
ggctggtccctggctaccaaccgactggttgacgtgggcgaagcagtaggtattgtggct
gcccagtccattggcgaacctggtacccagctaactctccggtccttccactcgggtggt
gtggcatcagcttccgatatcactcagggtcttcctcgtgttgctgagctttttgaagcc
cgcactcctaagggtgaagctcccattactgatgtggatggaactgttcatattgaagac
aatgaccgggggcggactattacagtttctgctgatgagtccgatgagacctatgagtac
aaggttacccgccgggttcctctcttggtcaaggatggtcagcatgtagacgccggtacc
gccctgattgaaggttccgttgatcctaagcgtatcctggaagtcctcggcccccgtgct
gcccaagtagctattgtggaaggcgttcatgatgtctatcgctcccagggtgtagacatc
cacgataagcatattgaagtcattgttcaccaaatgctgaggagggctgtcattactgcc
cctggagacagcaagtatctggaaggcgagcttgtcgaccgtcagattcttcgtgcgacc
aatgagcagattgctgccgcaggcggccgtccggcagatggtcgtcctgaactgatggga
attactaaggcttccctggcaaccgagtcctggttgtctgccgcctccttccaggagaca
acccgggttctgacagaagctgctattcagaataaggttgatgatctcaagggtctgaaa
gagaacgttatcatcggtaagctcattcctgccggtaccggcctggcccgttaccgcaat
gcccaggtggagcctgacaaggccatccgtgacactatctaccccagttttggcttaggt
gatgagcctgaggaaattactgttgatgatggtcagggtctggatgatattgatttcaac
aagattgatttcaaccagctcaacatcagcgatgacttcaatcctgatgacttcctcaac
gatttgggcggtgcggcagaagtcgatccgtcagaagctgaaaagcccacgtcagacgag
cctgagcaggatctacctgatcagcctgatctgaatcagtaa
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