Scardovia inopinata: SCIP_0342
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Entry
SCIP_0342 CDS
T03977
Name
(GenBank) putative ABC transporter ATP-binding component
KO
K19350
lincosamide and streptogramin A transport system ATP-binding/permease protein
Organism
sij
Scardovia inopinata
Pathway
sij02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SCIP_0342
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sij02000
]
SCIP_0342
01504 Antimicrobial resistance genes [BR:
sij01504
]
SCIP_0342
Transporters [BR:
sij02000
]
ABC transporters, eukaryotic type
Other subfamilies
Macrolide exporter
SCIP_0342
Antimicrobial resistance genes [BR:
sij01504
]
Gene variants
Macrolide resistance genes
Transporters
SCIP_0342
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
NACHT
TsaE
nSTAND_NTPase5
Pox_A32
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAR06409
LinkDB
All DBs
Position
438908..440758
Genome browser
AA seq
616 aa
AA seq
DB search
MSLINVSHLTFAYEGSYDNIFEDVSFQIDTNWRLGFIGRNGRGKTTFLKLLMGKYDYSGS
ISSHVDFIYFPFDIPDRSALTSDLIQQTISGRRSEQTEESIKSEPWKEHVEEYKEYTEYT
EEYVEEQDYEPWKIEKELSLLNVDLDVLNRPFSTLSNGEQTKVLLAALFLKDRAFLLIDE
PTNHLDEPTRKEVGNYLKRKKSFILVSHDRALLDECVDHILSINKTSIDIQAGNFSAWEL
NKKRKDAYELAQNEKLQKEVDQMKIAAVRISHWSDLKEATKIGAGDKGYVGHKAAKLMKR
SKLVERHRDIAIEQKEKLLKDLERTDDLSLHPLDFPAVSSDSSGSSDGSNSSRDGQNSLD
LIRVDNLSLAYGDKCLCRNLSFTLHPGERIALQGKNGSGKTSILRQICCRASALGMPGQS
APAQSEAAQSSAAQDTSVQPCRLLSGQILVADGLVISLLSQDTSFMQGNLEDFMRNKYKQ
ERAQLGLATNYTNRNQLDLLEDGLERRIRLLVQVLRQLDFSDSQMEKNLQDFSEGQKKKF
LLAVSLSQRAHVYIWDEPLNFIDILSRVQIENLIRRAQPTMIFVEHDQTFTQSVATRIVD
LPPVALPDTALSAASD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgatcaatgtttcacatcttacttttgcctacgaaggcagttatgacaatatt
tttgaagatgtttcttttcaaattgacaccaactggcgtctgggttttatcggccgtaac
ggccggggcaaaactacttttcttaaacttctgatgggaaagtatgattattcagggtct
atatcttcgcatgttgattttatttattttcctttcgatatccctgatcggtccgctctt
acttctgacttaatccagcagacaatcagcggcagacggtcggagcagactgaggaatcg
atcaagtcagaaccatggaaagagcatgtggaagaatataaagaatatacggaatatacg
gaagaatatgttgaagagcaggattatgagccatggaagatagagaaagagctctccctc
ctgaatgttgatcttgatgtcctcaaccgtcccttttctaccctgtccaatggggagcag
actaaagttctcctggctgccctctttttgaaggatagagccttcctcttgattgatgag
cccactaatcatctggatgaaccaactagaaaggaagtaggcaactatctgaagcggaag
aagagctttatcttggtctcgcacgaccgggcccttttggatgaatgtgtcgatcatatt
ctgtccatcaacaagacaagcatcgatattcaggctgggaatttttcggcctgggagctc
aataaaaagcgcaaggacgcatacgaactagcccagaatgagaaactgcagaaagaagtt
gaccagatgaagattgctgcagtcaggataagccattggtctgatctgaaagaggctaca
aaaataggggctggcgataagggatatgtcggtcacaaggcagcgaaacttatgaaacgc
tcaaaattggttgagcgccacagggatattgcgattgagcaaaaggagaagctcctgaaa
gatctggagaggacagatgatctgtccttgcatcctcttgattttcccgctgtctctagt
gatagcagcggaagtagtgatggaagcaacagcagcagagatgggcagaacagtctggac
ttgattcgggttgacaacctgtctttggcttacggggataagtgtctgtgtcggaacctg
tcctttactctgcatccgggggagcggatcgccctgcaggggaagaacgggagtggcaaa
accagcattcttcgtcagatttgttgcagagccagtgccctgggcatgcctggccaaagt
gcgcctgcccaaagcgaagctgcccaaagctcagctgcacaggatacgtccgtccagcct
tgccgcctgctgagtggtcagattcttgtggctgacggcctggttatctccctgctttct
caggatacgtcttttatgcaggggaatctggaagattttatgcggaataaatataagcag
gagcgggctcagctgggtcttgcaacaaattatacaaaccgaaatcagttggatctgctg
gaagacggcctggaaagacgaatccgtctgctggtccaggttcttcgacagcttgatttt
tctgatagtcagatggagaagaatctgcaggatttcagtgaaggacaaaagaagaaattc
cttcttgcggtttctctcagccagcgggcccatgtttatatatgggatgaaccgttgaat
tttatagatattctttcccgagttcagatagaaaatctgataaggcgggcccagcccacc
atgatttttgttgagcacgatcaaacatttactcaatcagtggcaaccaggattgtcgat
ttgccgcctgtagcactgccagatacggctctgtctgctgcatccgactga
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