Scardovia inopinata: SCIP_0507
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Entry
SCIP_0507 CDS
T03977
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sij
Scardovia inopinata
Pathway
sij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCIP_0507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sij03400
]
SCIP_0507
Enzymes [BR:
sij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCIP_0507
DNA repair and recombination proteins [BR:
sij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCIP_0507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAR06574
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All DBs
Position
646980..650663
Genome browser
AA seq
1227 aa
AA seq
DB search
MNSGKDSSEQSSPVVTGTLAPFVVSLMKDPTFSELVADGSDYTLIGAPEGIRPALAAAVA
AADQSDQAGKAKQGKQAGRQPGRPVVLVVPSSRDAEDAVASIRSWYRGNPSDIDELAAWE
TLPHERLSPRADTIARRMSVFRRLAHPVAGSRLFSVLKILVVPVRSLIQPVVRGIQDVQP
LVFASGGQMDLEWAEKRLIENAYVRSDLVMDRGEFAVRGGILDIFPPTAAHPVRIDFFGD
EIDSIKAFHAADQRTFGQEIDQMWAPACRELQLTDAVRARAKALIGAIPNADDMLESISQ
GIPVEGMESLIPALVDDLMPAYSLFDSQSVIMFSDPERLRRAAEDLLKTANEFLAASWHV
AAGGHGAGAPISFDKSNFMDFEEIHRALQLTHSACWDLSGLGVDESAEGHARLEAVPPAA
FRGNENKAASGIGALLDQGMNVVVTAAARGTLSRLKRAITTTGITRVSYLLSLTSDGFVD
TAARVAVLTERDITGHSSVAAQTRTPPRRRKAIDLVELKKGDYVVHEQHGIGRFVEMVQR
PVSPGRSHGRTLVASASAGAGQHTQSMREYLVIEYAPSKRGAPPDRLYIPTDQLDLISKY
IGAEEPKLNKLGGSDWAATKARAKKRVKEIAQDLVKLYAARQRTAGFAFSPDTPWQHELE
EAFPYQETPDQLTTIDEVKADMEKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAV
LVPTTLLAQQHYETFSERFEGFPVTIKMMSRFQTVAENAQTVKELSEGTVDLVIGTHKLL
NPKITFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMS
TLATPPEDRLPVLTYVGAYEDAQVTAAIRRELLRGGQVFYVHNRVQDISKVAAHIHDLVP
EARIGTAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIVETGLDISNANTLVVDRADRFGLS
QLHQLRGRVGRGRERAYAYFLYDPSKTMTQTAHDRLETIAQNTALGSGYDVAMKDLEIRG
TGNLLGDEQSGHIEGVGFDLYVRMVSDAVQEYKEPERIQAVSTSVDLPVEASIPESYINS
DKLRLEIYRKIAAARNESDFDDIRDELQDRYGKPPQSLDILFAIARLRMKAKNMGITDVI
AQGKTMRIVGPEPRESVMLRLKRIYGSALYRRQTHTLTIPTPFQGSFDSAPMGSAAIISW
TNQVLVDLQWHAGGQGLSTSRKSSNLE
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaattctggtaaggatagcagcgaacaatcatcacctgtggtgacggggactttggcc
ccgtttgtggtcagtcttatgaaggacccaaccttttctgagctggtggcagatgggtcc
gactataccctcattggtgcccctgaaggcatccgtccggctttggctgctgctgttgct
gcggctgatcagagcgatcaggcaggtaaggccaaacaaggcaagcaagcaggccgacag
cctgggcggccagttgtcctggttgttccttccagccgggacgctgaagatgcggttgct
tccatccggtcatggtatcgggggaatccgtcggacattgatgagctggctgcctgggaa
actctgcctcatgagcgtctgtcgccccgggccgacacaattgcccgcagaatgtctgtt
ttccgtcgcctggctcatcctgttgccggttctcgtttgttttctgttctgaaaatcctg
gttgttcctgtccggtctttaatccagcctgtggttcgggggattcaggatgttcagcct
ctggtttttgcttctggtgggcagatggatctggaatgggccgaaaagcgtctgattgaa
aacgcctatgttcgttctgatttggtcatggacaggggggaatttgctgtacgaggggga
atacttgatatctttccgccaaccgctgcccacccggtcaggattgatttcttcggtgat
gagattgacagtataaaggctttccatgcagccgatcagaggacttttggccaggaaatt
gatcagatgtgggctccggcctgtcgcgaactacagctgacagatgctgtcagagctagg
gctaaggcattgattggggctattcccaatgcagatgatatgctggaatctatttctcag
ggtattccggttgaaggcatggagtccctgattccagccctagttgatgatctgatgccc
gcctactccctgtttgattctcagtcggtgataatgttcagcgatccggaaaggctgaga
cgggcagcagaggatttgttgaaaacagccaatgaatttttggcagcaagctggcacgtc
gcggctggcggtcacggtgccggtgcccctattagtttcgataaatcgaatttcatggat
tttgaagagatccaccgtgctcttcagttgacccattcggcttgctgggatttatcgggt
ttgggcgtagatgagtcggctgaaggacatgccagactggaggcagtgcctcctgctgcc
ttccggggaaatgagaacaaggctgccagtggaataggtgcgctgcttgaccagggtatg
aatgttgtggtgaccgctgctgcccgtggaaccctcagccgtttgaaaagggccatcacc
accaccggtataacaagagtttcctatcttttatctttgacttccgatggctttgttgat
actgctgctcgagtagcagtcctgacagagagggacattaccggtcattcttccgttgcc
gctcaaacccgaaccccgccccgccgccgtaaagccattgatctggttgagctgaaaaag
ggtgactatgtggttcatgagcagcacgggattggccgttttgtggaaatggtccagcgg
ccggtttctccagggcgttctcatggacggaccctggtagcctcggcatctgcaggggcc
ggtcagcatactcagtccatgcgggaatacctggtcattgagtatgcccccagcaagagg
ggcgccccgcctgaccggctgtatattcccactgatcaactggatttgatcagcaaatat
ataggggcagaagagcccaagctgaataaattgggcgggtctgattgggcagcaacaaaa
gccagggccaaaaaacgagttaaagaaattgctcaggatttagtaaagttgtatgccgcg
cgccagcggacagcgggctttgctttcagtcctgataccccgtggcagcatgaattggaa
gaagcttttccctaccaggagactccggatcagctgactaccatagatgaagtgaaggca
gacatggagaaacctatccccatggatcgccttatctgcggtgacgtcggtttcggcaag
actgaaattgcagtcagggctgcctttaaagctatccaggattccaagcaggtggcagta
ttagttcctaccactttgctggctcagcaacattatgagactttttctgaacggtttgaa
ggctttcctgtaaccattaagatgatgagccgcttccaaacggttgccgaaaatgctcag
actgttaaggagctgagtgaaggaacagtcgatctggtcattggaactcacaagctgctc
aatcctaaaattacctttaaagatttgggcctggtcatcattgatgaggagcagcgcttc
ggagtagagcataaggaaactttgaaagccctcagaactaatgtggacgtgctcagcctg
tctgcaacccctattcctcgcactctggaaatggctgttaccgggatcagggaaatgtcg
accctggctactccacctgaagatcgactgccggttttgacgtatgtgggagcatacgaa
gatgcccaggtgactgcggccatcagacgcgagcttttgcggggaggccaagtattttat
gtgcataatcgggttcaggatataagcaaggttgcagcccatatacatgacttggtgcca
gaggcaagaattggtacagcgcatgggaaaatgggggagaaacagctggatgctgttatc
cgtgatttctggcatcgcgatattgatgttctggtttgcaccaccatcgtggaaaccggt
cttgatatttccaatgctaataccctggttgtagacagagctgaccgtttcgggctttcc
caacttcaccagctgaggggacgggtaggtcgcggccgagagcgggcctatgcctacttc
ctctacgatcccagcaagactatgactcagacagctcacgataggttagaaaccattgcc
cagaatactgccttaggatcgggctacgacgtggctatgaaggatctggaaatccgcgga
actggtaatttactgggggatgaacagtctggtcatattgaaggtgttggttttgacctt
tatgttcgcatggtatccgatgctgtccaggagtataaagaacctgaacggattcaggct
gtgtctaccagcgtggatttacccgtggaagcgtcgatccctgagtcatatattaattcc
gacaaattgcggttggaaatctacaggaagatcgctgctgcccggaatgagtcagacttt
gacgatattcgggatgagttgcaggacaggtatggcaagccgccgcaatctctggatatt
ctttttgctattgccaggctgaggatgaaggcgaagaacatgggcattaccgatgtcatt
gcccagggaaagaccatgcgaattgtgggtcctgagccgcgggagtctgtcatgctcaga
ttaaaacggatttatggcagtgccctttaccgcaggcagacacataccctgactattccc
acaccttttcaggggtcgtttgattccgcccccatgggatcagctgctattatttcctgg
actaatcaggttttggttgatcttcagtggcacgccggcggccagggcctgtccacgtcc
agaaaatcgagtaatctggaatag
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