Scardovia inopinata: SCIP_0719
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Entry
SCIP_0719 CDS
T03977
Name
(GenBank) putative long-chain-fatty acid CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sij
Scardovia inopinata
Pathway
sij00061
Fatty acid biosynthesis
sij00071
Fatty acid degradation
sij01100
Metabolic pathways
sij01212
Fatty acid metabolism
sij02024
Quorum sensing
sij04146
Peroxisome
Module
sij_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SCIP_0719
00071 Fatty acid degradation
SCIP_0719
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SCIP_0719
09145 Cellular community - prokaryotes
02024 Quorum sensing
SCIP_0719
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sij01004
]
SCIP_0719
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sij04147
]
SCIP_0719
Enzymes [BR:
sij01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SCIP_0719
Lipid biosynthesis proteins [BR:
sij01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SCIP_0719
Exosome [BR:
sij04147
]
Exosomal proteins
Exosomal proteins of breast milk
SCIP_0719
Exosomal proteins of breast cancer cells
SCIP_0719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAR06786
LinkDB
All DBs
Position
complement(898913..901108)
Genome browser
AA seq
731 aa
AA seq
DB search
MLREFTYPNITVINDADTIYSFLRRRVANNPDGPLAAYKEGTHKAWTYVSATEMNQRVLQ
TARGLLALGVKKGDKVIIYAPTSYQWGIADFACAAIGAISVPIYDTDSAGQVSNIVREVK
PTIAFTAGDKRAQILETLKASSATTVTYVFNFEKDGLEALKDWGANVSEDRLNAAIDQVR
SHDPATIVYTSGSTGRPKGAVLSNSNFAHIVINGPNILPTMLNADNTRLLLFLPLAHCFA
RYIQYSTFYSDKGVVAYQADAKHLLTDMRSFKPSYLLGVPRVFEKVYNAASQKAGAGLTG
HIFARAVKHFTQWSKDEEAGLRHSLKDKIAHAFFERSVGESIRSALGGDLHFLACGGAPM
NIDLAHFFHGIDGITFIQGYGMTETAAPCVINSEIHNRVGSAGMPAPGFSVRLAADDELE
IKGPSVFSGYYNDPARTDDAFDGPDHLWVKTGDLAQIDDDGFIYIIGRKKDIIITAGGKN
VSPAPMEDTIKTCPIVSQAVVIGDGRPFISALITLDKDMLSAWLSSQGRDSSVTMEEACK
DDSVRSFVQEYVDQANATVSRAESVRKFIIIPDDFSQKDKTMTPSMKVVRKAILKKYENL
INTDMYAPKPSTMPKAPTVRIMEAADTVSESTQRSLKQAQKKIDPVINKAQEKIDPMLTK
AKDAINDSVGKYVRISKDEAEPKEDPASQDQDKQDKGKQDKTDAQSADTAAAEILTESDS
AASSQAGSSAS
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgttacgtgagtttacctatcccaacataacggttatcaatgatgctgatacaatttat
tccttcctcaggcgtcgagtcgccaacaatcctgacggtcctttggcggcatataaagag
gggacacataaagcctggacttacgtcagtgccacagagatgaatcagcgtgtgctccaa
acagcccgaggtctgcttgcgttaggtgtgaaaaaaggcgacaaggttattatctatgct
cccacctcttaccaatgggggatcgcagacttcgcctgtgcagctattggagcaatttct
gtccccatttatgataccgattctgcggggcaggtcagcaatattgtccgcgaagtgaag
ccgaccatcgccttcacagccggagacaagagggcgcagatcttggaaaccttgaaagcc
agttctgccaccacagtcacatatgtttttaattttgaaaaagacgggttagaagctctg
aaagactggggagctaatgtttctgaggatcgtctgaatgctgctatcgatcaggtgaga
agccatgatccagcaaccatcgtctatacatcaggatctaccggtcggcctaagggagct
gttttaagcaatagtaatttcgctcatattgtgattaacggccccaatattctgcctacc
atgctaaacgcagacaatactcgtcttcttcttttcctacccctggcccactgctttgcc
cgctatattcagtattccaccttctatagcgataaaggcgttgtggcttatcaggccgat
gctaagcacctgctgactgatatgagatccttcaagccttcttatcttttgggggttcct
cgagtattcgagaaagtttacaatgcagcttcccagaaggcaggagctggcttaaccggt
catatttttgccagagcagtcaagcatttcacccaatggtccaaggacgaggaagcaggc
ttgaggcatagtctgaaggataaaatcgcccatgctttctttgaacgcagcgtgggagaa
tcgattcgttctgccctggggggagacttgcatttcctcgcctgcggcggggcgcctatg
aatattgacctggctcatttcttccacgggatcgacggaattacctttatccaaggctat
ggaatgacggaaacggcagccccctgtgtaatcaattcagagatccacaaccgggtggga
tcggcaggaatgcctgcacctggtttttctgtccgcctagccgcagatgatgagttggaa
ataaaaggtcccagcgttttctctggttattacaacgaccctgctagaaccgatgatgct
tttgacggtcctgaccatttatgggtgaaaactggagatttggctcagatcgatgatgac
ggtttcatttatatcattggccgcaagaaggatatcattattacggctggtgggaaaaat
gtatctccggcaccgatggaggatactatcaagacctgtcctattgtttcccaggctgta
gtgataggggatggccggccctttatttctgctcttattactcttgacaaagatatgctg
tcggcatggctctcgtcacagggcagggacagctctgtaactatggaagaagcgtgcaag
gacgattccgtcaggtccttcgttcaggaatacgtagatcaggccaatgcaactgtttcc
agagcggaatctgttcgtaaatttattattatccctgatgatttctcgcagaaggacaag
acgatgaccccttctatgaaggttgtcagaaaggctatcctgaaaaaatatgagaacctg
atcaatactgatatgtatgcacccaaaccaagtactatgcccaaggctcctacggtcaga
attatggaggctgcggacactgtttctgagtctactcaaaggtctttgaaacaggcacag
aaaaagattgatcctgtgatcaacaaggcccaggaaaagattgaccccatgcttaccaag
gcgaaggatgccattaatgattcagtaggcaagtatgtcaggatatctaaagacgaagct
gagccaaaagaagatcctgcttcccaagaccaggataagcaggataagggtaagcaggat
aagactgatgcgcagtcggcagatactgctgctgcagaaattttgactgaatcagactca
gccgcctcttctcaggcaggctcttctgcttcgtag
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