Scardovia inopinata: SCIP_0730
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Entry
SCIP_0730 CDS
T03977
Name
(GenBank) putative exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sij
Scardovia inopinata
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sij03016
]
SCIP_0730
Enzymes [BR:
sij01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SCIP_0730
Transfer RNA biogenesis [BR:
sij03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SCIP_0730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAR06797
LinkDB
All DBs
Position
complement(913585..914922)
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AA seq
445 aa
AA seq
DB search
MSNSAVYNAEHDVRLLSEPSGGVPDLISTREGFDDFVERFASASGPLAADAERASGYRYS
QQDWLVQFKRQGAGIALVDPVAVAEKGAQWEDFNQALGDTEWIIHDSLQDLPGYYALGMR
PSRLFDTERAARLLGNAHFGLAAVTEKYLGLTLAKEHSAADWSYRPLNRDMRNYAALDVE
VLIELRNTLSAELRRSGKEEWAQEDFAFLLKKGSRPRPERIEPWRHISRINSLDRDLRGL
AVARQLWTVRDYYAKQYDIAPNLLLQDSAIIEAAQRKPHNSREFASIRSLNQRVRMRKGD
ERDKMFERYAPIQRRVKPAVWKQAIRQALDLPDNQLPSRKNVRSDESGTNAPKSMKLWKS
HHPDRYACLEAAKRRINQISQDTQTPADILLKPQILRNLCWHSKDLPLRNREREGSDSVH
TFLIDQGARRWQADLLSESLTSVII
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattctgctgtctacaatgctgagcatgatgtgaggcttctatcggagcccagt
gggggagtgcccgaccttatttctacccgtgaaggttttgatgattttgtggagagattt
gcttctgcttccggccccttggccgcagatgctgaaagggcttccggctaccggtattca
cagcaggattggttagttcagtttaagcgccaaggtgcaggaatagcgctggttgatccg
gtggcagttgcggagaaaggggctcagtgggaagattttaaccaagccctgggcgatact
gaatggattattcatgacagtcttcaggatctgcctggttattatgccctggggatgaga
ccaagcagacttttcgatacggaaagagcggctcgtttactggggaatgctcactttggt
cttgctgccgttaccgaaaagtatttgggtttgactctggccaaggagcattcggctgct
gactggtcttaccgtccccttaacagggatatgcgcaactatgctgctcttgatgtggaa
gtcctgattgagctgaggaatactctttctgctgaactgagaagaagcggaaaagaagag
tgggcccaggaggatttcgccttccttttgaagaaaggatcccggcctcggccggaaaga
atcgaaccctggcgtcatatttctcgaataaattccctggatcgggatctgcgggggctg
gcagttgcccgtcagctgtggacggtcagggattattatgccaagcagtatgatatagct
cctaatcttttgctccaggacagtgccataattgaagcagcccagcgaaaaccgcataat
tccagagaatttgcttctattcgctctctcaatcaaagggtgagaatgagaaaaggggat
gagcgcgacaagatgtttgaacgctatgcccccattcagcgccgggtcaagcctgctgtc
tggaaacaggccatccgacaggctcttgatttgcctgacaatcagcttccatccagaaag
aatgtcagatctgatgaatccgggaccaatgctcctaaatcgatgaaactgtggaagagc
caccatcctgataggtatgcctgcctggaagctgcgaaaagaagaataaatcagattagt
caggatacgcaaaccccggcagacattctgctcaaacctcaaattctgcggaatctttgc
tggcattccaaggacttacctctcaggaatagggagagggagggcagtgactcagtgcac
acttttctcatagatcagggggcccgtaggtggcaggctgacttgctttctgagtctctg
actagcgttattatataa
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