Scardovia inopinata: SCIP_1001
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Entry
SCIP_1001 CDS
T03977
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sij
Scardovia inopinata
Pathway
sij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCIP_1001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sij03019
]
SCIP_1001
03110 Chaperones and folding catalysts [BR:
sij03110
]
SCIP_1001
03029 Mitochondrial biogenesis [BR:
sij03029
]
SCIP_1001
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sij04147
]
SCIP_1001
Enzymes [BR:
sij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SCIP_1001
Messenger RNA biogenesis [BR:
sij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SCIP_1001
Chaperones and folding catalysts [BR:
sij03110
]
Heat shock proteins
HSP60 / Chaperonin
SCIP_1001
Mitochondrial biogenesis [BR:
sij03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SCIP_1001
Exosome [BR:
sij04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SCIP_1001
Exosomal proteins of other body fluids (saliva and urine)
SCIP_1001
Exosomal proteins of breast cancer cells
SCIP_1001
Exosomal proteins of colorectal cancer cells
SCIP_1001
Exosomal proteins of bladder cancer cells
SCIP_1001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BAR07068
LinkDB
All DBs
Position
complement(1268674..1270290)
Genome browser
AA seq
538 aa
AA seq
DB search
MAKIIKYDEEARQGMLEGLDELANTVKVTLGPRGRNVVLDKTYGAPTITNDGVSIAKEID
LEDPYARIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLRNVTAGSNPIALRRGIE
KASDAIVERLLSNAKPVETKEQIAATATISAGDPEVGDKIAEALDKVGQDGVVTVEDNNK
FGLDLEFTEGMRFDKGYISPYFVTNADEQTAVLEDPYILLTSGKVSSQQDIVHIAELVMK
SGKPLLIVAEDVDGEALPTLVLNKIRGTFNTVAVKAPGFGDRRKAMLQDMAILTGAQVVS
DELGLKLDSIDDTVFGHASKVIVSKDETTIVSGAGSKEDVAARVAQIRSEIEDSDSDYDR
EKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQA
AADVQKNVKLEGDEATGADIVFRAIEAPLKQIAQNAGFSGEVVIDKVRTLPAGSGLNAAT
GEYEDLLSAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPPAPAAAPNPDMGY
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaattattaaatatgatgaagaagcccgccagggtatgcttgaaggcctggat
gagttggctaataccgtcaaggtaacattggggcctcgcggtcgtaatgttgttctcgac
aagacctatggagctcccaccattactaatgatggtgtatccattgctaaggaaattgat
ctggaagatccttatgcccgcattggtgctgagctggtcaaggaagttgccaagaagaca
gacgatgttgccggcgatggaacgactactgctacggttttggcccagtctctggtccat
gaagggctgaggaatgtgacagcaggttcaaatcctattgccctgcgccgcggcattgag
aaggcttcagatgcaattgtagagcgcctgttgtctaacgctaagcctgttgaaactaag
gaacagattgctgctacagctactatttctgccggggatcctgaggttggcgacaagatt
gccgaagctctggacaaggtgggacaagatggtgtagtcaccgttgaagacaacaataag
ttcggtctagatttggaattcaccgaaggaatgcgtttcgacaagggttatatttcccct
tactttgtaaccaacgcagatgagcagacagcagtactggaagatccctacattcttttg
acttccggcaaggtttccagccagcaggatattgttcacattgctgagttggtcatgaag
tcaggcaagcctttgctgatcgttgctgaggacgttgatggagaggctctgcccaccctg
gttctcaacaagattcgcggtactttcaacaccgtagctgtcaaggctcctggttttggt
gatcgccgcaaggctatgctgcaggatatggcaatcctcaccggtgcacaggttgtatcc
gatgagctgggtctgaagctggattctatcgatgatactgtcttcggacatgcttccaag
gttattgtttccaaggatgaaaccaccatcgtatctggagcaggctccaaggaagatgtt
gctgcccgggtcgctcagattcgttctgaaattgaagattctgattccgactatgatcgt
gagaagcttcaggaacgcttggctaagttggctggcggcgttgctgttatcaaggtagga
gcagctaccgaggtagaagcgaaagagcgcaagcatcgcattgaggatgctgtccgcaac
gctaaggctgctatcgaagaaggtcttcttcctggaggtggtgttgccctggtccaggca
gctgcagacgttcagaagaatgttaagctggaaggtgatgaagcaactggtgctgatatt
gttttccgcgctattgaagctcctctcaagcagattgcccagaacgcaggtttctccggc
gaggtagtcattgacaaggttcgcaccctgcctgctggaagcggtctgaatgcagccaca
ggtgagtacgaagatctcctgtccgctggtgtaactgatcctgttaaggtaacacgttct
gccctgcagaatgcagcctcaatcgctggtctcttcctgaccactgaggctgtagttgcc
aacaagccagagccgccggccccagccgctgcccctaacccggacatgggctactaa
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