Streptococcus iniae SF1: K710_1661
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Entry
K710_1661 CDS
T02686
Name
(GenBank) YmdA/YtgF family protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sik
Streptococcus iniae SF1
Pathway
sik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K710_1661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sik03019
]
K710_1661
Messenger RNA biogenesis [BR:
sik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K710_1661
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KhpA-B_KH
dUTPase
RRF
Motif
Other DBs
NCBI-ProteinID:
AGM99412
LinkDB
All DBs
Position
complement(1593747..1595354)
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AA seq
535 aa
AA seq
DB search
MIDIVLLIVCALIGLIIGYALLSLKLKSAKENADLTLLNAEQDAVNIRGKAEEEAAHIRL
SAERESKANRKELLLEAKEEARKYREEIEQEFKSERQELKQLETRLTERAFSLDRKDENL
SGKEKLLDSKEQSLNDKSKHIDERQTEVEKLEVEKKAELERVAAMTIAEAREVILMETEN
NLTHEIATRIRDAERDIKDKTDKTAKDLLAQAMQRMAGEYVTEQTITSVHLPDDNMKGRI
IGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLIADGRIHPARIE
ELVEKNRLEMDNRIREYGEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGK
LAGILAGELGENVALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKYKEHPVVVNTIAS
HHGDVEPDSVIAVLVAAADALSSARPGARNESMENYIKRLRDLEDIATSFDGVQNSFALQ
AGREIRIMVQPEKVSDDQVVILSHKVREKIENNLDYPGNIKVTVIREMRAIDYAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgattgatattgtactattgattgtttgtgccctcattggtttgataataggttatgca
cttctttcgctaaaattaaagtcagcgaaagaaaatgcggacttgactcttcttaacgca
gagcaagatgctgttaatattcgtgggaaagctgaagaagaagcagcccatattcgttta
tcagcagaacgtgaaagtaaagcaaatcgcaaggaattacttttagaagcaaaagaagaa
gcaagaaaatatcgtgaagaaattgaacaagaatttaaatctgaaagacaagagcttaaa
cagttagaaacgcgtttgacagaacgtgccttttctcttgaccgaaaagatgagaatttg
tcaggtaaagaaaaattacttgatagcaaagaacaaagtctgaacgataaatctaaacat
attgatgagcgtcaaacagaagttgaaaagcttgaagtagagaaaaaagctgaattggaa
cgtgttgcagcaatgacaattgctgaagcgcgcgaagttatcttgatggaaacagagaat
aacttaacacatgaaattgcaactcgtatcagagatgcagaacgtgacattaaagataaa
actgataaaacagctaaagatctactggcacaagctatgcaaagaatggctggtgaatat
gttacagaacagaccattacaagtgttcacttaccagatgataatatgaaggggcgtatt
attggtcgtgaaggccgtaatattcgcacacttgaaagcttaactgggattgatgttatt
attgatgacacaccagaggtagttgttctatctggatttgatccaattcgtcgtgaaatt
gcacgaatgacattggaatcattaattgcggacggtcgtattcatcctgctcgtattgaa
gagctggttgagaaaaatcgtctggagatggataaccgtattcgtgagtatggtgaagcg
gctgcatatgaaattggagcaccaaatttacaccctgatttaattaaaattatgggaaga
ttgcaattccgtacgtcttacgggcaaaatgttctccgccattctgttgaagttggtaaa
ttagcgggtatcttagctggtgaactaggtgaaaatgttgccctagcaagacgtgcaggt
ttccttcatgatatgggcaaggctattgaccgagaagttgaaggtagccatgttgaaatt
ggcatggaatttgctcgtaaatataaagaacacccagttgttgttaatactatagcaagt
caccacggtgatgttgagcctgactctgttattgcagttttggttgcagcagcagatgcc
ttaagttctgcaagaccaggtgctcgtaatgaatccatggaaaactatattaaacgtctc
cgagatttagaagatattgcaactagctttgacggtgttcaaaatagttttgcccttcaa
gccggtcgtgagatccgtattatggttcaacctgaaaaagtttctgatgatcaagttgtt
attctatcacataaagtacgtgagaagattgaaaataatttagattatcctggaaatatt
aaagtaacggttatccgtgaaatgcgtgctattgattacgccaaataa
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