Ruegeria pomeroyi: SPO0026
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Entry
SPO0026 CDS
T00215
Name
(GenBank) polyA polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO0026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO0026
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
SPO0026
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SPO0026
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AAV93357
UniProt:
Q5LWH5
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Position
24424..25578
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AA seq
384 aa
AA seq
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MTRIDEAWLTEPATQQVCRALTEGGAQALFVGGCVRNALLGAPVSDIDITTDAHPERVMA
LAAAAGIKAVPTGIAHGTVTLVANSIPHEVTTFRRDVETDGRRAVVAFSDSIHEDAARRD
FTMNALYARPDGTVLDPLDGLPDLQARRVRFIGDATDRIREDYLRSLRYFRFHAWYGDAE
AGFDAEALAAIAGNLDGLSRLSRERVGAEMLKLFAAPDPAPSVAAMRAAGVLAQLLPGAD
DRALAPLVHLEDGLGADPIRRLAALGDGEALASLRLSKAQMALLDTLRRAALGTAGAGEL
GHELGVEAARDALLLRAALLEQPLDPHAPAAIARGAAAVFPVTARDLMPAYSGPALGARL
ATLKARWIASDFSLSRAALLVDKD
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgacccggattgacgaggcatggctgaccgaaccggcgacgcaacaggtgtgccgggcc
ctgaccgagggcggtgcgcaggcgctgttcgtcggtggctgtgtgcgcaacgcactgttg
ggcgcgccggtcagcgatatcgacatcaccaccgacgcccatcccgagcgggtgatggcg
ctggccgccgcggccgggatcaaggcggttcccacaggcatcgcccatggcaccgtgacg
ctggttgccaatagcattccgcatgaggtcaccacttttcgccgcgatgtggaaaccgac
ggccgccgcgcggtggtcgccttttccgactcgatccacgaggatgccgcgcggcgcgat
ttcaccatgaacgcgctttatgcccggcccgacggcacggttctggacccgttggatggg
ctgcccgatctacaggcgcggcgcgtgcggttcatcggtgatgcgaccgaccgcatccgc
gaggattacttgcgctcgctgcgttatttccggtttcacgcctggtatggcgatgccgag
gccggtttcgatgccgaagcgctggcggcgattgccggtaatctcgacgggctgtcccgc
ctctcgcgcgagagggtgggggccgagatgttgaaactgttcgccgcgcccgacccggcg
ccctcggtcgctgccatgcgcgccgccggggtgctggcccagcttctgcccggtgcggat
gatcgggcgctggcgccgctggtacatctggaagacgggttgggggccgatccgatccgg
cggctggccgcgctgggcgacggcgaagcactggcctcgctccggttgagcaaggcgcag
atggcgttgctggacacgctgcgccgagctgctttgggcaccgccggggccggagagttg
gggcacgaactgggcgtcgaggcggcgcgcgatgcacttcttctgcgggccgcgctgctg
gaacaaccgcttgacccgcacgcgcccgccgccattgcgcgcggggctgcggcggtgttt
ccggtcactgcccgcgatctgatgccagcctattctggccccgcgctgggcgcgcggctt
gccacgctaaaggcgcgctggatcgcctcggacttcagcctgagcagggcggctttgctg
gttgacaaggattga
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