Ruegeria pomeroyi: SPO0038
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Entry
SPO0038 CDS
T00215
Symbol
kdsB
Name
(GenBank) 3-deoxy-D-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00541
Biosynthesis of various nucleotide sugars
sil01100
Metabolic pathways
sil01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SPO0038 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sil01005
]
SPO0038 (kdsB)
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
SPO0038 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
sil01005
]
Lipid A
SPO0038 (kdsB)
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Motif
Pfam:
CTP_transf_3
NTP_transf_3
ADH_zinc_N
Dna2_Rift
Motif
Other DBs
NCBI-ProteinID:
AAV93369
UniProt:
Q5LWI2
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All DBs
Position
complement(38766..39566)
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AA seq
266 aa
AA seq
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MSVLIAIPARYASTRYPGKPLVSLTGASGTEMTLIERSWRAAMAVSGADRVVVATDDDRI
RAVAEGFGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTPHWFVEDLIAG
LRAAPEADIATPVLRCDGMALNGFLNDRKHGRVGGTTAVFAADRSALYFSKEVIPFTSQI
YADDAPTPVFHHVGVYAYRPGALADYPTWPMGPLETLEGLEQLRFMENGRKVLCVEVEAR
GRQFWELNNPEDVARIEEMMAAMGLD
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcctcatcgccattcccgcccgctatgcctcgacccgctatcccggcaagccg
ctggtcagcctgaccggcgccagtggcacggaaatgacgctgatcgaacgctcgtggcgg
gcggcgatggcggtgagcggcgccgaccgggtggtggtcgccaccgatgacgaccgcatc
cgcgcggtggccgaaggcttcggggccgaggtcgtcatgacctcgtcagattgcgtcaac
gggaccgagcgctgcgccgaggcacatgcggtgctgggtggcggtttcgacatcgtggtg
aacctgcagggcgatgcgccgctgaccccgcactggtttgtcgaggatctgatcgcgggc
ctgcgcgccgcgcccgaggccgatatcgcaacaccggtgctgcgctgtgacggcatggcg
ctgaacgggtttctgaacgatcgcaaacatggccgggttggtggcaccacggcggtgttc
gcggccgaccgcagcgcgctctatttctccaaggaggtgatccccttcacctcgcagatc
tatgccgatgacgcacccactccggtgttccaccatgtcggcgtctatgcctatcggcct
ggcgcgctggcggattatccgacctggccgatggggccgctggaaacgctcgaagggctg
gaacagctgcgtttcatggaaaacgggcgcaaggttctgtgtgtcgaggtcgaggcgcgc
gggcgccagttctgggagctgaacaaccccgaggacgtggcccggatcgaagagatgatg
gccgcgatggggctggactga
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