Ruegeria pomeroyi: SPO0083
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Entry
SPO0083 CDS
T00215
Name
(GenBank) exonuclease, putative
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sil
Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sil03016
]
SPO0083
Enzymes [BR:
sil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SPO0083
Transfer RNA biogenesis [BR:
sil03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SPO0083
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
LytR_cpsA_psr
Motif
Other DBs
NCBI-ProteinID:
AAV93413
UniProt:
Q5LWM8
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All DBs
Position
complement(81366..81980)
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AA seq
204 aa
AA seq
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MANHLYKNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAA
PNLCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLC
QELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQSC
FDFLPTRARLDLVGWPETDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatcatctctacaagaacgacctgcccgacgggctggatctgggccccgtggtg
gccatcgactgcgagaccatgggactgaacccccatcgcgaccgtctctgtgtgatccag
atgtcgggcggcgacggaaacacccatatcgtgcaggtagaaaagggccagaccgccgcg
cccaacctgtgtgcgatgctggaaaaccccgaggtgctgaaactgttccacttcggccgt
ttcgacattgccgcgctctatcacgcctttggcgccctgaccgcaccggtctattgcacc
aagatcgccagccgcctggtgcgcacctataccgatcgccacgggctcaagaacctgtgc
caggagttgctgggcgtcgatatctcgaaacagcagcagatgagcgattggggcgccgag
acgctgagcgaggcgcagctggactatgccgcctccgatgtcctctatctgcaccgcctg
cgcgaggcgctggatggccggctggcgcgcgaaggccgcgccgatctggcgcaatcctgc
ttcgatttcctgcctacacgggcgcggctcgaccttgtgggctggcccgaaaccgatatc
tttgcccactcatga
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