Ruegeria pomeroyi: SPO0156
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Entry
SPO0156 CDS
T00215
Symbol
rtcR
Name
(GenBank) transcriptional regulator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
sil
Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sil03000
]
SPO0156 (rtcR)
Transcription factors [BR:
sil03000
]
Prokaryotic type
Other transcription factors
Others
SPO0156 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
AAA_2
MCM
Mg_chelatase
NACHT
AAA_22
AAA_19
AAA_16
Roc
AAA_7
PduV-EutP
AAA_30
HAUS4
bpMoxR
AAA_18
Motif
Other DBs
NCBI-ProteinID:
AAV93484
UniProt:
Q5LWU7
LinkDB
All DBs
Position
complement(172724..174295)
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AA seq
523 aa
AA seq
DB search
MRNVVIGFLGTQLDSGKRKRWKPSVSLCNQPDFPVDRLELLYDQKFLRLAENVRREIEVT
SPKTEVLLRQLNLSDPWDFQEVYGKLFDLARDYGFDEDRERYFVHLTTGTHVAQICWFLL
TESRHVPAKLAQTGPPRDEKDGPGKLDIIDLDLSRYNALQQRFDLLAREYSDLLKGGIET
KSAAYNAVIDRIELVASSSDAPILLLGDSGTGKTELAQRIYELKLQRRRVKGRLVQINCA
TLRGSSALATLFGQRRSHTGQAGSERSGLLHEASGGVLFLDEVDELGLDEQAALLHAIET
GRYYPLGSDHEVTSRFQVIAGTSRDPVHLTAEGRFRPDLLARLNMWSFRLPALRDRREDI
EANLIFELARAERELGTQVGFNTDARDLFLRFARDPATLWPGNFRDFGSAIRRLCTLAPR
GRITRAMVEEEIKGLRTGWQRAAGDGDHRLLIGILGNQAAEIDPFDRVQLAEVIRVCRTS
ASLSEAGRRLFAVSRTQRRTTNDADRLRKYLQRFGLEWAMIAE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaatgtggtcatcggattcctcggcacccagcttgacagcggcaagcgcaagcgc
tggaagccgagtgtcagcctttgcaatcagcctgatttcccggttgaccggctggagctg
ctttacgatcagaaattcctgcgcctggccgagaacgttcggcgcgagatcgaagtcacc
tcacccaagaccgaggtcctgctccgccagctgaacctatccgatccctgggattttcag
gaggtctatggcaagcttttcgacctcgcccgcgactatggctttgacgaggatcgcgag
cgctatttcgtccacctgaccaccggcacccatgttgcgcagatctgctggtttctgctg
accgaaagccgtcatgtgcccgccaagctggcccagaccggcccgccgcgcgacgaaaag
gacggccccggcaagctagacatcatcgaccttgacctcagccgctacaatgcgctgcaa
cagcgtttcgacctattggcccgcgaatacagcgacctcttgaagggcgggatcgagacg
aaaagcgcggcctataatgcggtcatcgaccgaatcgaactggtggccagcagttcggac
gcgcccatcctgctgctgggggacagcggcaccggcaagaccgaactggcccagcggatt
tacgaactgaagctgcaaaggcggcgggtgaaggggcggcttgtgcagatcaactgcgcc
actttgcggggaagttccgcattggccacgctcttcggacagcgccgcagccataccggg
caggcgggcagcgaacgcagcggcctgttgcacgaggccagcggcggtgtgctgttcctt
gatgaggtcgacgaacttgggctggacgaacaggcggccctgctgcacgcgatcgagacc
gggcgctattatccgcttggctcggaccacgaggtcacaagccgctttcaggtcatcgcc
ggaaccagccgcgacccggtgcacctgaccgccgagggccggttccgccccgatctgctg
gcgcggctcaacatgtggagctttcgcctgcccgcgctcagggatcggcgcgaggatatc
gaggcgaacctcattttcgaactggcgcgcgccgagcgcgagcttggcacacaggtcgga
ttcaacaccgatgcgcgcgacctattcctgcggtttgcgcgcgatccggcgacactctgg
cccggaaattttcgcgactttggcagtgcgatccgccgtctgtgcacgctcgccccgagg
gggcggatcacccgcgccatggtcgaggaagagatcaaggggcttcggacgggctggcag
cgtgcagcgggtgacggcgatcaccgcctgctgatcggcatccttggaaatcaggcggca
gagatcgacccgttcgaccgggtgcagcttgccgaggtgatccgtgtctgccgaacgtcc
gccagcctcagcgaagcagggcgacggttgtttgccgtctcgcgcacgcagcgccgaacc
acaaacgatgccgaccgcctcagaaagtacctccagcgctttggtctggaatgggcgatg
attgcggaatga
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