Ruegeria pomeroyi: SPO0288
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Entry
SPO0288 CDS
T00215
Symbol
udgA
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPO0288 (udgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO0288 (udgA)
Enzymes [BR:
sil01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SPO0288 (udgA)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SPO0288 (udgA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AAV93606
UniProt:
Q5LX74
LinkDB
All DBs
Position
300846..301631
Genome browser
AA seq
261 aa
AA seq
DB search
MESALDPHTALALLQWQVELGVTETILDAPLDRYALPETAPRPPAQAAADPRRPAMPAPP
PKAPEVDPAQEAVRAARAVGSLDALRTALAEFEHCELKRGARNLVFADGVPGARVMIIGE
APGRDEDREGRPFVGRAGQLLDRMLAAIGLSRSESVYITNVLPWRPPQNRDPLPVEIGMM
KPFLERHVALAKPEVLVLMGNISCETVLGRRGITRLRGQWTQAMGLPVLPMFHPAYLLRQ
PQMKRQAWADLLELQAKLRES
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggcacttgaccctcataccgcgctggccctgctgcaatggcaggtcgaactg
ggcgtgaccgagacgatcctggatgcgccgctggatcgctatgcgctgccggaaaccgcg
ccgcgcccgcccgcgcaggccgctgccgatccgcgccgcccggctatgcccgccccgccc
ccaaaggcacccgaagtcgatccggcgcaagaggctgtccgcgccgcgcgcgcggtgggc
tcgcttgacgcgctgcgcacggcattggccgagtttgaacattgcgagctgaagcgcggc
gcccgtaacctggtctttgccgatggcgtgcccggcgcgcgggtgatgatcatcggcgag
gcgccgggccgcgacgaggaccgcgaggggcggccctttgtcgggcgggccggacagttg
ctggaccggatgctggcggcgatcggcctcagccggtcggaaagcgtctatatcaccaac
gtcctgccctggcggcccccgcagaaccgcgacccgctgccggtggaaatcggcatgatg
aaaccgtttctggaacggcatgtggcattggccaagcccgaggtgctggtgctgatgggc
aatatcagctgcgagacggtgctgggccggcgcggcatcacccggttgcgcgggcaatgg
acccaagccatgggcctgccggtgctgccgatgtttcacccggcctatctgctgcgtcag
ccgcagatgaagcggcaggcctgggccgatctgctggaacttcaggcaaaactgagagag
tcgtga
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integrated database retrieval system
