Ruegeria pomeroyi: SPO0417
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Entry
SPO0417 CDS
T00215
Symbol
pbpA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00550
Peptidoglycan biosynthesis
sil01100
Metabolic pathways
sil01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SPO0417 (pbpA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SPO0417 (pbpA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sil01011
]
SPO0417 (pbpA)
Enzymes [BR:
sil01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SPO0417 (pbpA)
Peptidoglycan biosynthesis and degradation proteins [BR:
sil01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SPO0417 (pbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
AAV93735
UniProt:
Q5LWC5
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All DBs
Position
complement(429730..431676)
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AA seq
648 aa
AA seq
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MRRSARDMDKVQRVLTRRTLLLGGIQAAFIGGLAMRMRYMQVDQADQFRLLAEENRINIR
LIPPSRGELFDRNGAIIAQNTPSYRIVMVREDAGDVDAVVANLQRLIPLDPEELDRALAE
MRRSPPFLPVTLADQISWEHISKVAVNAPALPGITPEVGLTRVYPQASDFAHVVGYVGPV
SDYDLSQIQDPEPVLRIPRFQIGKVGLEAKQEDLLRGKAGAKRVEVNANGRVMRELDRRE
GKPGADLQLTVDSALQSYVQARLGQESAAAVVIDCETGDLRAIASAPSFDPNLFVRGISV
ADYRGLTEDPYRPLANKSVQGAYPPGSTFKMITAMAALEAGITNPEETVYCPGFLEVSNR
RFHCWKRGGHGHMNLEESLEQSCDVYYYDVALKVGIDRISAMAEEFGLGVRHDIPMSAVA
RGLAPNRDWKARVHGQDWLVGDTANASIGQGFMLASPLQLAVMTARIATGRKVAPRLVKS
IDGVEQPSGAGEPLAVNQANLRRLRKGMYAVSNNRRGTAYRSRILADDNRMAGKTGTSQV
RNITAAERAAGVIRNEDLPWERRDHALFVCFAPFDNPRFAVSVVVEHGGGGSTAAAPIAR
DILLQALYDGFPPLESYPAKDRSRIEAQQERLRRELRPVTRPEDKDRA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagacggtcggcccgtgacatggacaaggtacagcgggttctgacccgccgcaccctg
ctgctgggcgggatacaggcggccttcatcggcgggttggcgatgcgcatgcgctatatg
caggtcgatcaggccgatcagtttcgcctgctggccgaggaaaaccggatcaacatccgc
ctgatcccgccgtcccggggcgagctgtttgaccgcaacggtgccatcatcgcccagaac
accccttcgtatcggatcgtcatggtgcgcgaggacgcgggcgatgtggatgcggtggtt
gccaatctgcagcgtctgatcccgctcgatcccgaggaactggaccgcgccctggccgag
atgcgccgctcgccgcccttcctgcctgttaccctggccgaccagatcagttgggaacat
atctcgaaagtggcggtgaacgcccccgccctgcccggcatcacgcccgaggtcggcctg
acccgggtctatccgcaggccagcgattttgcccatgtggtgggctatgtcggcccggtc
agcgactatgacctgagccagatacaggaccctgaaccggtgctgcgcatcccgcgcttt
cagatcggcaaggtcgggctggaggccaagcaagaggatctgctgcgcggcaaggccggc
gccaaacgggtcgaagtcaacgccaatggccgcgtcatgcgcgagctggaccggcgcgag
ggcaagcccggcgccgatctgcagctgaccgtggactcggcgctgcaatcctatgtgcag
gcaagattgggacaggaaagcgcggctgccgtggtcatcgactgcgaaaccggcgacctg
cgcgccatcgcctcggcccccagtttcgatcccaacctgttcgtgcgtggcatctcggtg
gccgactaccggggcctgaccgaggacccctatcgcccgctggccaacaagtcggtccag
ggcgcctatccgcccggctcgaccttcaagatgatcaccgcgatggcggcgctcgaggca
gggatcaccaaccccgaggagacggtctattgccccggcttcctcgaggtcagtaaccgc
cgtttccattgctggaaacgcggcggccacggccatatgaacctggaagagtcgctggag
cagagctgcgacgtctattactacgacgtggcgctcaaggtcgggatcgacaggatctcg
gccatggccgaggagttcggcctgggcgtccgccacgatatcccgatgtccgccgtggcg
cgcgggctggcccccaaccgcgactggaaggcgcgcgtgcatggccaggactggctggtc
ggcgataccgccaacgcctcgatcggtcagggcttcatgctggcctcgccgctgcaactg
gcggtgatgaccgcccggatcgccaccgggcgcaaggtggcgccgcggctggtgaaatcc
atcgacggggtcgagcagccctcgggcgcgggcgagccgctggcggtgaaccaggccaac
ctgcgccgcctgcgcaagggcatgtacgcggtcagcaacaatcgccgtggcaccgcctat
cgcagccgcatcctggccgatgacaaccggatggcgggcaagaccggcaccagtcaggtc
cgcaacattacagccgccgagcgtgccgccggggtgatccgcaacgaggacctgccctgg
gaacgccgcgaccatgcgctgtttgtctgcttcgcccccttcgacaacccgcgtttcgcg
gtgtcggtggtggtcgaacatggcggcggcggctcgaccgcggcggcgccgatcgcccgc
gacatcctgcttcaggcgctctatgacgggttcccgccactcgagtcctatccggccaag
gaccgcagccggatcgaggcgcagcaggaacggctgcgccgcgagttgcgcccggtcacc
cggcccgaggacaaggaccgcgcatga
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