Ruegeria pomeroyi: SPO0511
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Entry
SPO0511 CDS
T00215
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPO0511 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sil03021
]
SPO0511 (rpoA)
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO0511 (rpoA)
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPO0511 (rpoA)
Transcription machinery [BR:
sil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPO0511 (rpoA)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPO0511 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
AAV93828
UniProt:
Q5LW32
LinkDB
All DBs
Position
507760..508776
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLEVKPGNDPARQATVIAEPLERGFGLTLGNALRRILMSSLQGAAIS
SVQIDNVLHEFSSVAGVREDVTDIILNLKQVSLRMDVEGPKRLSVNAKGPAVVTAGDISE
SAGIEVLNRDHVICHLDDGADLFMELTVNTGKGYVSADKNRPEDAPIGLIPIDAIYSPVK
KVAYDVQPTREGQVLDYDKLTMKIETDGSITPDDAVAFAARILQDQLSIFVNFDEPESAG
RQDDDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFEDAF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaagaactgggcagaactgatcaagccgacccagcttgaggtcaagccgggc
aacgacccggcacgccaggcgaccgtgatcgccgaaccgctggagcgtggtttcggtctg
acgctgggcaacgctctgcgccgcatcctgatgagctcgctgcaaggcgcggccatcagc
agcgtgcagatcgacaacgtcctgcacgagttttcgagcgtggccggtgtgcgcgaagac
gtcaccgacatcatcctgaacctcaagcaggtctcgcttcgcatggatgtcgaagggccc
aagcgcctgtcggtcaatgccaagggcccggccgtcgtcaccgccggtgacatcagcgaa
agcgccggcatcgaggtgctgaaccgcgaccacgtgatctgtcacctggacgatggcgcc
gacctgttcatggaactgaccgtgaataccggcaagggttatgtgtcggccgacaagaac
cgccccgaagacgcgcccatcggcctgatcccgatcgacgcgatctattcgccggtgaaa
aaggtcgcctatgacgtgcagcccacccgcgagggccaggttttggactatgacaagctg
accatgaagatcgagaccgacggctcgatcaccccggacgatgccgtggcctttgctgcg
cgtatccttcaggatcagctgtcgatcttcgtcaacttcgacgagccggaatcggcgggc
cgccaggacgacgatgacggtctggagttcaacccgctgctgctgaagaaggtggacgag
ctggaactgagcgtccgttcggccaactgcctgaagaacgacaacatcgtctatatcggc
gacctgatccagaaaaccgaagccgagatgctgcgcaccccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagtgctgtccggcatgggtctgcacctgggcatggatgtcgag
gactggccgcccgacaacatcgaggatctggcaaagaagttcgaagacgctttctga
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