Ruegeria pomeroyi: SPO0571
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Entry
SPO0571 CDS
T00215
Name
(GenBank) PKD domain protein
KO
K20276
large repetitive protein
Organism
sil
Ruegeria pomeroyi
Pathway
sil02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SPO0571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_4
PKD
K319L-like_PKD
Sde0182_C
InlK_D3
Motif
Other DBs
NCBI-ProteinID:
AAV93886
UniProt:
Q5LVX4
LinkDB
All DBs
Position
576429..581300
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AA seq
1623 aa
AA seq
DB search
MEERNMALARNWTAATLAVALLAIGSGTGAQTVADEGLLVVYGPQAPSREGDTDRREQVF
FSVPASLAERVYVRVFDPETGGEGDFTYGGSADSETTFRLFGGDGAYSDADRPEPVADGA
REPRLIPYDPVTQPGKMIREQVWGHDLATDGRWVSLAAVRARQGEIVGDRAYFRIDVQGS
RGNDGNGYSLGVSLARDRDRAPEGLEMFSYQPTVRWSAGKPATRVDFTRTAPGPLTVQSF
DGANGELALITDYRDLGLRISGQDFWTSDEVATDETNLAISLLGGFETPNDVTLAVFDAE
GNPVPLSMPPYRAVVPPRPVARGTGQPLADCRSVAFDASGSTGRTPLSYLWEFDDGARST
DPVVAHRYSEPGRYTARLSLLEPGSRPGRGDRIEVPVHVRNAPAAVAGSDIVVAPGQVVD
FDGSASQPSDSPITGYRWTFGDGGAAQGPRAQHVYDQPGQYRAVLRVQDDAVHPCNFGTA
VRRVVVNFAPVAEAGTDQSAIVGQAVTLSGAASYDVDGAILDYRWSMGDGTVLSGETVTH
RYEQSGSYQVLLTVTDDSGVVNKIATDGARIEVNAPPEPRFTIPDRPVSVSEVAVLDASA
STDADGQILSYIWDFGDGAMGEGPVASYAWTRAGEFSVTLTVEDDSATASALQSITRIVR
VDAAPVADAGPDQYVTATEVRFDGGGSVDPDGRVTDWQWDFGDGATASGQSVTHAYLRPG
RYEVALIVRDDSGAPLNTHRDTMWLTINTAPIADAGPPQVVAPGEEFLLSGGASVDPDGA
ISDYLWTFPDGQVKQGQRVSHVLDEPGLHRIRLTVADNFAGGAAEDEAEVLITVNAAPVA
VAGRDLLIAPGDTVVFDAGQSFDPDGRLTSYRWEFEDLGAPLEAQRVERAFDAPGVWSAQ
LVVADDSGVLNATAADDVTIRVNHPPVAEAGAPVITDQLHVTFDGSGSKDGDGDPLIHRW
DFGDGSPPVYGETVTHVFPRAGIFPVTLRVDDGTGLSNARAIDATAVTIQARPMADAGGN
RDVCSGEPILFDASASADPDGGLLAYEWDFGDGSGSDLINPTKTYELPGVYPVTLKVRNG
TGTEHGTAVDRIAALVREGPIADAGPDMTVCSNAQVRFDGSGSSDADGAVNAFTWTFGDG
GSGSGATPQHIFRTPGTYSVTLTITGDARGACSPLDTDVSQVTVIAAPELKVLGQGRAAA
GIPASFSAGLDQLGGASPEGFSWSISDGTTYEGRDIEHVFAEPGDYLVTLRSRLSGGTEA
CSELEVQRRIIVNAAPEPVIDAPLRVSVGQSVRFDAGGSSDSDGAIARFAWAFGDGAGAE
GVQAVHRYETPGSYEVSLTVTDDAGVANSQITRRQQIEVAPSPVAGLTARGAVCPGVSLP
WAVSPGGETAVGWAFGDGTVAEGAETRHGFDRPGLMPVRVELDDGRDLPGSRRAEEIYVR
VNAQPTALAGPDRVVCPGEVVVFDAGGSGDVDGDLTSWRWTFSDGVTLEGARVERVFDAA
ADLTVQLSVQDDSGAEGCDIGTDSARILVNGTPQVDAGPDLTVPVGGAHDVVRFDAGAAS
DPDGHGLRLSWSFGDGTEATGAVVRHRFANPGSYTVTLRAQDSTGLVCGIGRDTATVTAV
ARD
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacggaatatggctttggcacggaactggacagcggcgacgctggctgtggcc
ttgttggcaatcggctccggaaccggcgcgcagaccgtcgcggacgagggtctgttggtg
gtctatggtccgcaggcgcccagccgcgaaggggataccgaccgtcgcgaacaggtgttc
ttttcggtgcccgcctctcttgcagagcgggtctatgtgcgcgtcttcgacccggaaacc
ggcggtgagggcgatttcacctatggcgggtcggccgattccgaaaccacgttccgcctg
ttcgggggggatggcgcctatagcgatgccgatcggcccgagccggtggcggacggcgcc
cgcgaaccgcgcctgatcccctatgacccggtcacccagcccggtaagatgatccgcgaa
caggtctgggggcatgatcttgcgaccgacgggcgctgggtctcgctggccgccgtgcgg
gcgcgtcagggcgagatcgtgggcgatcgcgcctatttccgtatcgacgtgcagggcagc
cgtggcaatgacggcaacggctattcgctgggtgtcagccttgcgcgcgaccgcgaccgg
gcacccgaggggctggagatgttctcttatcagcccaccgtgcgctggtcggcgggcaag
cccgcgacccgggtggatttcaccaggaccgcgcccggcccgctgacggtgcagagcttt
gacggggccaatggtgaactggcgctgatcaccgattaccgtgatctgggcctgcgcatc
tcggggcaggatttctggacctcggatgaggtcgccaccgacgaaaccaatctggcgatc
agcctgctgggcgggttcgagacccccaatgacgtgacgcttgcggtgttcgacgccgag
ggcaatccggtgcccctgagcatgccgccttatcgcgcggtcgtgccgccgcgtccggtg
gcacggggcaccggccagccgctggccgattgccgctcggtcgcatttgatgccagcggt
tcgaccgggcgtaccccgctttcctatttgtgggagttcgacgacggcgcccgctccacc
gatccggtggtggcgcatcgctattccgagccggggcgctataccgcgcggctcagcctg
ctggaaccgggcagccgtccggggcgcggtgatcggatcgaggttccggtgcatgtgcgc
aacgcccctgccgcggtggcgggcagcgatatcgtggtggcaccgggccaggtggtcgac
ttcgacggctccgcctcgcaaccctcggacagcccgatcaccgggtatcgctggaccttt
ggcgatggcggtgcggctcagggcccgcgcgcccagcatgtctatgaccagccgggccag
tatcgcgccgtgctgcgggtccaggacgatgcggtgcatccctgtaacttcggcactgcc
gtgcgccgggtcgtggtgaactttgcccccgtggccgaggcaggcaccgatcagagcgcg
attgtcggccaggcggtgaccctgtcgggcgcggccagctacgatgtggacggcgcgatc
ctcgattaccgctggagcatgggcgacggcaccgtgctgagcggcgagacggtgacccac
cgctatgaacagtcgggcagctatcaggtgctgctgaccgtcaccgatgacagtggcgtg
gtgaacaagatcgccaccgatggtgcccggatcgaggtgaacgccccgcccgagccgcgg
ttcaccatccccgatcggcctgtctcggtatccgaggtggcggtactcgacgcctcggcc
tcgaccgatgcggatgggcagatcctcagctatatctgggacttcggcgatggcgccatg
ggcgaggggccggtggccagctatgcctggacccgggccggggaattctcggtcaccctg
acggtcgaggatgacagcgccaccgcctcggcgctgcaatccatcacccggatcgtgcgg
gtcgatgccgcgccggtggcggatgcgggtcccgaccaatacgtgaccgcgaccgaggtc
cgctttgacggcggcggttcggtcgatcccgacggccgggtcaccgactggcagtgggat
ttcggcgatggcgccacggccagcggccagagcgtcacccatgcctatctgcgccccggt
cgttacgaggtggcgctgatcgtgcgtgacgacagcggcgcgccactcaacacccatcgc
gacaccatgtggctgacgatcaacacagcgcccatcgctgatgccggcccgccgcaggtg
gtggccccgggtgaggagttcctgctctcgggtggcgcctcggtcgatcccgatggcgcg
atctcggactatctgtggaccttcccggacgggcaggtgaaacagggccagcgcgtcagc
catgtgctggacgagcccgggttgcaccgcatccgcctgactgtggccgacaatttcgcc
ggaggcgccgccgaggacgaggccgaggtgctgatcaccgtcaacgcggcgccggtggcc
gtggccgggcgcgacctgctgatcgcgccgggcgatacggtggtgttcgatgccgggcag
agctttgacccggacgggcggctcacctcctatcgctgggagttcgaggatctgggcgcc
ccgcttgaggcgcagcgggtcgagcgcgccttcgacgcgcccggggtctggagcgcacaa
ctggtcgttgccgatgacagtggcgtgctgaacgccaccgccgccgatgatgtgaccatc
cgcgtcaaccacccgccggtggccgaagccggggcgccggtgatcaccgatcagttgcat
gtcacctttgatggctccggctccaaggatggcgatggcgatccgttgatccaccgctgg
gatttcggcgacggctcgcccccggtctatggcgagacggtcacccatgtgttcccgcgc
gccggtatttttccggtcacgctgagggtggatgacggcaccggcctgtccaatgcgcgc
gccatcgacgccacggccgtgaccatccaggcgcggccgatggccgatgccggtggcaat
cgcgatgtctgctcgggcgaaccgatcctgttcgacgcttctgccagtgccgatcccgat
ggcgggctgctggcctatgaatgggatttcggcgacggatccggctcggacctgatcaat
ccgaccaagacctatgagttgcccggcgtctatccggtgacgctcaaggtgcgcaacggc
accggcaccgaacatggcaccgccgtcgaccggatcgccgcgctggtgcgcgaggggccg
atcgccgacgcgggccccgacatgacggtctgttccaatgcgcaggtgcggttcgacggc
tcgggatcgagcgatgcggatggcgcggtcaatgcctttacctggacctttggcgatggc
ggcagcggcagcggtgcgacgccgcagcatatcttccgcacgccgggcacctattcggtg
accctgaccatcaccggtgacgcgcgtggtgcgtgcagcccgctcgacaccgatgtcagc
caggtgacggtgatcgccgcgcccgagctgaaggtgctgggccagggtcgtgccgctgcc
gggattccggccagcttctcggccgggctggatcagctgggcggggcctcgcccgagggc
ttcagctggtcgatctcggatggcaccacctatgaggggcgcgacatcgaacatgtcttt
gccgagccgggcgattatctggtgacgctgcgcagccggctgagcggcggtaccgaggcc
tgcagcgagctggaggtgcagcgccgcatcatcgtcaacgccgcgcccgaaccggtgatc
gatgcccccttgcgggtctcggttggtcagtcggtgcgttttgacgcgggcggatcctcg
gacagcgatggggcgattgcccgctttgcctgggcgttcggcgatggcgccggtgccgag
ggcgtgcaggcagtacaccgctacgagacgccgggcagctacgaggtgagcctgaccgtc
accgatgatgccggcgtcgccaacagccagatcacccgccgtcagcagatcgaggttgcg
ccctcacccgtcgcgggcctgaccgcgcgcggcgcggtctgtcccggcgtgagcctgccc
tgggcggtcagccccgggggggagacggcggttggctgggcctttggtgacggcaccgtc
gccgagggggccgagacccggcacgggttcgaccggcccggcctgatgccggtgcgggtc
gagctggatgatggtcgcgacttgccgggcagccgtcgcgccgaagagatctatgtccgc
gtgaacgcccaacccaccgcgctggccgggcctgaccgggtggtctgcccgggcgaggtg
gtggtgttcgatgccggtggctcgggcgatgtggacggcgacctgaccagctggcgctgg
accttctcggacggggtcacgctggagggcgcacgcgtcgagcgggtgtttgacgccgcc
gccgatctgacggtgcagctgagcgtgcaggatgacagcggcgccgagggctgcgacatc
ggcaccgacagcgcccgtatcctggtcaacggcacgccgcaggtcgatgccggtccggat
ctgaccgtgccggtgggcggcgcccatgacgtggtgcgctttgatgccggggcggccagc
gatcccgatggccatggactgcggctcagctggtcctttggcgacgggaccgaggcgacg
ggtgcagtggtgcgtcaccgcttcgccaatcccggcagctacaccgtgaccctgcgcgca
caggacagcaccgggctggtctgcggcatcgggcgcgataccgcgaccgtgaccgcggtt
gcacgcgactaa
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