Ruegeria pomeroyi: SPO0656
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Entry
SPO0656 CDS
T00215
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03030
DNA replication
sil03430
Mismatch repair
sil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPO0656 (dnaE)
03430 Mismatch repair
SPO0656 (dnaE)
03440 Homologous recombination
SPO0656 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sil03032
]
SPO0656 (dnaE)
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO0656 (dnaE)
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPO0656 (dnaE)
DNA replication proteins [BR:
sil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPO0656 (dnaE)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPO0656 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
AAV93964
UniProt:
Q5LVP4
LinkDB
All DBs
Position
678962..682525
Genome browser
AA seq
1187 aa
AA seq
DB search
MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMGMPAVAVTDTNNLFAALEFSVGASG
AGIQPIIGCQLDLAYVAAMPGERPKPPAPLVLLAQNEAGYENLMKLNSCLYVDKGGQLPQ
VTLEELEALGDGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADRFYIELQRHPG
EGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIADGAYVDQAEG
RRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEVVELR
RQANEGLQARLAVIPHAVSAEDYQKRLDFELDIIEGMGFPGYFLIVADFIKWAKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALK
DEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHVAADGRQLYDPAEGAE
NQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYVPPCVNRSQATFDVVGGE
LVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARRPDRAEERPFVTLFDFARRVD
LKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSGAIFEQKSSNQVSLFGEAGDD
LPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKGVLTLDEVTEQARSGP
VLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTLFSEVLEKSREFLETGSHVVLT
AEATMEADQLKLLARSVGPADAVVAEAGATGLRVFMDNAGAVETVAHILAEAAQAARNAA
RGPVQLCLMDPGLPGEVEMDLGQEFPLNPQIKGALKSLDGVVDVEEM
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaatccccgattcatccaccttcgtcttcacaccgaatactcccttctggag
ggggcggtccggctaaagaaactgcccgcgctttgcgacaagatgggcatgccggcggtg
gcggtgaccgataccaacaacctgtttgcggcgctggaattctcggtcggggccagcggg
gcgggcattcagccgatcatcggctgtcagctggatctggcctatgtcgccgcgatgccg
ggcgaacggcccaagccgccggcgccgctggttctgctggcgcagaacgaggccgggtat
gagaacctgatgaagctcaacagctgcctttacgtggacaagggcggacaactgccacag
gtcacgctggaggaactggaggcgctgggcgacgggcttatctgtctcagcggcgggccg
gacgggccggtgggacggctgttgcaggccggtcagcgcccggcggccgaggcgctggtg
gatcggctggcggccatctttgccgatcggttttatatcgagttgcagcgccatccgggc
gaaggtggcgcgcccgaggcggagcgcctgaccgaacgcggccatgtggaaatggcctat
gccaagggcctgccgctggtggccaccaatgatgtctatttccccgaggccggcatgtac
gaggcgcatgacgcgctgatctgtatcgccgacggcgcctatgtggaccaggccgagggc
cgccgccgcctgaccgcgcagcattacctgaaatcgccgcaagagatggcgaccctgttc
gccgacctgcccgaggcgatcgagaatacggtcgagatcgcgcggcgctgtgccttcatg
gcctatcggcgcgacccgatcctgccgaaattcgccgatgacgaggtcgtggaactgcgc
cgtcaggccaacgagggcctgcaggcccgactggcggtcatcccgcatgcggtcagcgcc
gaggattaccagaaacggctcgatttcgaactcgacatcatcgaggggatgggctttccc
ggatacttcctgatcgtcgccgacttcatcaaatgggccaaggatcatgatattccggtg
gggccggggcggggttcgggtgcggggtcgctggtcgcctatgcgctgaccatcaccgac
cttgatccgctgcgctattcgctgctgttcgaacggtttctcaatcccgaacgggtctcg
atgcccgacttcgacatcgacttctgcatggaccggcgcgaagaggtgatccgctacgtg
caggagaaatacggccgcgacaaggtggggcagatcatcacctttggtgcgcttttgtcc
aaggccgccgtgcgcgacatcgggcgggtcttgcagatgccctatggccaggtcgatcgt
ctgtccaagatgatcccggtcgagggggtcaagcccgtcagtatcgaaaaggcgctgaag
gacgaaccgcgcctgcgcgaagaggcccgcaacgaagaggtggtcgaccggctgctgacc
tatggccagcaggtcgaggggttgctcagaaacgcctcgacccatgccgccggtgtggtg
atcggagaccggccgctggacgcgctggtgccgctctatcaggatccgcgctcggacatg
ccggcgacccagttcaacatgaaatgggtggaacaggccgggctggtcaagttcgacttc
ctgggcctgaagaccctgaccgtcatccagaacgcgatggacctgatcttcaaatcgggg
cgcccgctgcatgtggccgctgacgggcgccagctttatgaccccgccgaaggggccgag
aaccagatcaacgccatcccgctggacgacgtaccgacctacaagctctactcggcggcc
aagacggtggcggtgttccaggtggaaagctcgggcatgatggatgcgctcaagcgcatg
aagcccacttgtatcgaggatatcgtggccctcgtggcgctttatcgcccggggccgatg
gaaaacatcccggtctattgcgaggtgaagaacgggctgcgcgagatcacctcggtgcat
ccgctcatcgaccatatcctcgaggaaacgcagggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggtgatggcgggctacagcctgggtggcgccgacctgctgcgccgc
gccatgggcaagaagatcaaggaggcgatggacgccgagcggcccaagttcgaaaccggc
gcggcagagaatggcgtcgatgccaagaaggcctccgaggtgttcgacctgctcgaaaaa
ttcgccaactacggtttcaacaaatcgcacgccgccgcctatgcggtggtcagctaccag
accgcctggctgaaggcgaaccacccggtggagttcatggcgggtgtcatgaactgcgat
atccacctcaccgacaagctggcggtctatttcgaagaggtccgcaaggggctgggcctg
ccctatgtgccgccctgcgtgaaccggtctcaggccacgttcgacgtggttggcggagag
cttgtctatgcgctgggcgcgctcaagaatgtgggcgtcgaggcgatgcgcctggtggtc
gaaggccgccagggcgctcatccgccggaaccggcgtcttcgcgcgacgccgcgaggagg
cccgacagggccgaggagcgcccctttgtgaccctgttcgatttcgcccgccgggtggac
ctgaaaaaggtcggcaagcgcccgctcgagatgatggcgcgcgccggggcctttgaccag
ctcgatcccaaccggcgtcgggtgttcgacagtatcgaggcgctgatggcctattccggc
gccatcttcgaacagaaaagctccaaccaggtctcgctctttggcgaggccggtgacgac
ctgcccgaaccgcgtctggcgcaggcgcccgactggctgcccgccgagcgcctgtcagag
gagttcaaggccatcggcttctacctctcgggccatccgctcgacgactatatgccggcg
ctgaaacgcaagggcgtactgacgctggacgaggtcaccgaacaggcgcgctccggcccg
gtgctggccaagatggcaggcgtcgtcgccggccggcaggaacgcaaatcggcgcgcggc
aaccgctttgcctttgcccagatgtccgacccgaccggcgccttcgaggtcacgctgttc
tcggaggtgctggagaaaagccgcgagttcctcgaaaccggctcccacgtggtgctgacc
gccgaggcgacgatggaggccgatcagctcaagctcttggcgcgttcggtcggccccgcc
gatgcggtggtggccgaggccggcgccaccggcctgcgggtgttcatggacaatgccggc
gcggtcgagacggtggcccatatcctggccgaggcggcgcaggctgcgcgcaatgcggcg
cggggtccggtgcagctgtgcctgatggatccgggcctgcccggcgaggtcgagatggat
ctggggcaggagtttcccttgaacccgcagatcaagggcgcgctgaaatcgctcgacggg
gtggtggacgtcgaagagatgtga
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